PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc006695.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 370aa MW: 41972.8 Da PI: 9.9557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc006695.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.3e-09	17	72	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........t 48 +fY++YA +vGF++r s+ ks +++ i ++ Cs+eg+++ + ++ + Itr_sc006695.1_g00002.1 17 SFYKNYAAKVGFDIRSSSIMKS-NDDVILTKYILCSREGYKNVTGSStlnvdgassS 72 5***************9999.7777999999*****99888776666665551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-6	17	71	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-29	117	208	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGANLGMTFI TLEAAISFYK NYAAKVGFDI RSSSIMKSND DVILTKYILC SREGYKNVTG 60 SSTLNVDGAS SSSITKRRRV SNKKGATDVD FKNFNRDIRA YIIDPISRKN FGCFGDVVSF 120 DATYQTNRYD MVFTPFTGID NHKKSITFAT GLLTKKDIAS YVWLFEHFKK AMGAEPKVIV 180 TNQDPAMRQA IPAVFNEARH RFCMWHIMCK VGEKVGSVLT YFKDVPMAGL LRTTSRSEGE 240 NATLLWFFKD LNFDKIPLKY VLNRWTKDAS LKPIFHIDGL TFDQGPRMEE RKVLLAQLWG 300 DMQCCIGLAE EAKMDKLIEF AQVIKKKKLI LMTEQTDLSP THRKNAMIES YCVSSKPSEI 360 SILPPRKAKK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGANLGMTFI TLEAAISFYK NYAAKVGFDI RSSSIMKSND DVILTKYILC SREGYKNVTG  60
SSTLNVDGAS SSSITKRRRV SNKKGATDVD FKNFNRDIRA YIIDPISRKN FGCFGDVVSF  120
DATYQTNRYD MVFTPFTGID NHKKSITFAT GLLTKKDIAS YVWLFEHFKK AMGAEPKVIV  180
TNQDPAMRQA IPAVFNEARH RFCMWHIMCK VGEKVGSVLT YFKDVPMAGL LRTTSRSEGE  240
NATLLWFFKD LNFDKIPLKY VLNRWTKDAS LKPIFHIDGL TFDQGPRMEE RKVLLAQLWG  300
DMQCCIGLAE EAKMDKLIEF AQVIKKKKLI LMTEQTDLSP THRKNAMIES YCVSSKPSEI  360
SILPPRKAKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189534.1	2e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12684	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-29	FAR1-related sequence 5