PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006078.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 491aa    MW: 54831.2 Da    PI: 5.5867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006078.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.45.5e-1241154901374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+elLl+cAeavs+ d + a+al++ l++++s +gdp+qRl ay++e+L+ar++ s+s +y++l+++e +    se l++++++++
  Itr_sc006078.1_g00001.1 115 LKELLLACAEAVSDADISTAEALMNLLEQRVSVSGDPIQRLSAYMLEGLRARVLASGSIIYRKLKCREPT---GSELLSYMQVLYH 197
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesg..skeeleetgerLak 167
                              ++P++kf+++ aN  I ea+ +e+ +HiiDf+i qG QW+ ++qaLa+R++g   pp +RiTgv++++s   +   l+ +ge Lak
  Itr_sc006078.1_g00001.1 198 ICPYYKFAYMSANIVIQEAMVNEKSIHIIDFQIAQGSQWVFFIQALANRRGGcgfPPFVRITGVDDSQSAqaRGGGLQLVGEMLAK 283
                              **************************************************66666***********9988888899********** PP

                     GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              +A+++gv fef++   + ++++e+e+L++++gEalaVn+ ++lh++ldesvs++++rd++L+lv+slsP+vv++veqe+++n++ F
  Itr_sc006078.1_g00001.1 284 VAASCGVGFEFHAADISWCSEVEMEDLNIRHGEALAVNFPYMLHHTLDESVSTKNHRDRLLRLVRSLSPRVVTLVEQESNTNTAAF 369
                              *************988999******************************************************************* PP

                     GRAS 254 lerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                              l rf e+l+yy+a+f+++ +a  pre+++r++ E+++++r+ivn++aceg++r+erhe ++kW+ rl +aGF+  pls ++   ++
  Itr_sc006078.1_g00001.1 370 LPRFRETLDYYTAMFECIdAAARPREDRQRVSAEEHCVARDIVNIIACEGSDRVERHELFGKWKLRLVMAGFTLCPLSPSVGLAVR 455
                              ******************777789999*********************************************************** PP

                     GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +l++++ + yr+ e++g+l+lgWk+r+Lv+ SaWr
  Itr_sc006078.1_g00001.1 456 DMLKEYSPN-YRLAESDGALYLGWKNRALVTSSAWR 490
                              *******55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.08689471IPR005202Transcription factor GRAS
PfamPF035141.9E-121115490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MQASEVPRTS GEQYYNPFHV LNNYISNDHC NSPTWEPSIH THNQHFFTLD SSPTMDYVNC  60
GSPLSGSSGV DDGNELRHVL RELENKLLGP EPEDSCSLND DVVVVVSKPS SLMGLKELLL  120
ACAEAVSDAD ISTAEALMNL LEQRVSVSGD PIQRLSAYML EGLRARVLAS GSIIYRKLKC  180
REPTGSELLS YMQVLYHICP YYKFAYMSAN IVIQEAMVNE KSIHIIDFQI AQGSQWVFFI  240
QALANRRGGC GFPPFVRITG VDDSQSAQAR GGGLQLVGEM LAKVAASCGV GFEFHAADIS  300
WCSEVEMEDL NIRHGEALAV NFPYMLHHTL DESVSTKNHR DRLLRLVRSL SPRVVTLVEQ  360
ESNTNTAAFL PRFRETLDYY TAMFECIDAA ARPREDRQRV SAEEHCVARD IVNIIACEGS  420
DRVERHELFG KWKLRLVMAG FTLCPLSPSV GLAVRDMLKE YSPNYRLAES DGALYLGWKN  480
RALVTSSAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5412248926378Protein SCARECROW
5b3h_A2e-5412248925377Protein SCARECROW
5b3h_D2e-5412248925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231761.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M51e-176SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A314KGR20.0A0A314KGR2_NICAT; Scarecrow-like protein 13
STRINGXP_009773976.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-160SCARECROW-like 13