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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc006005.1_g00007.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 173aa MW: 20051.3 Da PI: 8.2333 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 23 | 1e-07 | 1 | 23 | 20 | 42 |
HHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 20 ilKKAeELSvLCdaevaviifss 42
+lKK +EL +LCda va+i++ss
Itr_sc006005.1_g00007.1 1 MLKKINELTILCDAIVAMIMYSS 23
59********************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF55455 | 1.44E-8 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.3E-6 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 9.405 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 173 aa Download sequence Send to blast |
MLKKINELTI LCDAIVAMIM YSSFEQGRVI WPPTVERFEE LIVRFLNLPD EQQTRRMMTH 60 ETLNRGRIEK LSTQLLNLKN KNRKREMNAL MHHILTGEQS IHSLNFTDLN DIGCVLNTNL 120 ADVCLRFREL VTDSSLTLAP FLFATVVTFS SWAWDKQCGF SSGCVFWAKL SRH |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019170462.1 | 5e-52 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1532 | 23 | 67 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G31640.1 | 4e-16 | AGAMOUS-like 92 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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