PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc006005.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 120aa MW: 12801.9 Da PI: 4.4553 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.7 | 6.1e-08 | 1 | 23 | 20 | 42 |
HHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 20 ilKKAeELSvLCdaevaviifss 42 +lKK +EL +LCd+ va+i++ss Itr_sc006005.1_g00006.1 1 MLKKINELTILCDVVVAMIMYSS 23 59*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.37E-8 | 1 | 37 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.97 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-6 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MLKKINELTI LCDVVVAMIM YSSFEQGPVI WPPTVMFEKL IVRKLVTDSS PTLAPFLSAT 60 ASPSVLGLGT SNVDVFSGQS YQGMVGMVGM QTPMSPNLNP GMASNYQTQG EPGLSTSQNP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155497.1 | 2e-13 | PREDICTED: agamous-like MADS-box protein AGL80 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 3e-07 | AGAMOUS-like 92 |