PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006004.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 201aa    MW: 22907 Da    PI: 8.1214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006004.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05103125123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F r  +++ H   H
  Itr_sc006004.1_g00001.1 103 YECQFCPKVFDRLTSYTWHVGIH 125
                              99*****************7655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-655125No hitNo description
SMARTSM003551005678IPR015880Zinc finger, C2H2-like
SMARTSM003550.03103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
VNSTAIVTYI APEMHGEDGV NNTAIVTYIA PEMHGEEILP EGTDNPVGGV QIHDRYYCDF  60
CKIGFNERTE FARRRKFHGK TRSGGYWNQP PLTDGMIMKD GKYECQFCPK VFDRLTSYTW  120
HVGIHLRRNL KGSSTSIEAA PRAAKTYYGK DPRGARVRFR PRAYSSVGNL RLLSEFLMRD  180
EEEELANLRL MSEVSERCIC G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619