PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc005517.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 325aa MW: 36834.9 Da PI: 5.3329

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc005517.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.3	9.4e-42	30	128	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l + e+++am++++ye+++ra dPv G++++i++lq+q Itr_sc005517.1_g00002.1 30 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLTPPEKDEAMRTIIYESDMRAIDPVGGCYRIIRQLQRQ 115 7*********************************************************************************** PP DUF260 87 leqlkaelallke 99 +eq++ael+++ + Itr_sc005517.1_g00002.1 116 IEQSQAELDVVLH 128 ******98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.482	29	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-39	30	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MNIINNNNNN NNIIPKNNNI IISRTNGSQA CAACKYQRRK CASDCILAPY FPHDRQRQFL 60 NAHKLFGVSN ITKIIRHLTP PEKDEAMRTI IYESDMRAID PVGGCYRIIR QLQRQIEQSQ 120 AELDVVLHHL AYCRAQAAGD SVSLPNNNVN THRDVIDQTA ADVVVVNNNF GALREEWYDY 180 EQQPSNVNVN VNVNNGYPHP HHYPHYNQPQ FLVVQNNGDH RDDYHHHPVV DQTNVAAAWE 240 MHARDSKPPP PSSVVVPTSQ LSQDTDNACD SIKPILDLSG YVEDLNFGPE ETLEESEEVL 300 VKEQDKAAAL NEEEESLSNM LKIMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-28	25	145	5	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-28	25	145	5	127	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196357.1	1e-159	PREDICTED: LOB domain-containing protein 22
Swissprot	Q9LRW1	4e-51	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A328DJF8	1e-82	A0A328DJF8_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-46	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]