PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005470.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 311aa    MW: 34936.1 Da    PI: 7.9122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005470.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19168218255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ +++g
  Itr_sc005470.1_g00001.1 168 RYRGVRQRP-WGKYAAEIRDPKRRG--CRVWLGTFDTAIEAAKAYDRAAFRMRG 218
                              7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.881168226IPR001471AP2/ERF domain
SMARTSM003802.1E-36168232IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22168227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-32168226IPR001471AP2/ERF domain
CDDcd000183.03E-30168226No hitNo description
PfamPF008473.4E-14168218IPR001471AP2/ERF domain
PRINTSPR003672.5E-13169180IPR001471AP2/ERF domain
PRINTSPR003672.5E-13208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASFDEVSTL EHIRNYLLGE YSPREFNFDS RLSHSCSSSS GSSCSAVEVS SSQSEFLMDS  60
LSFQENFFDF KAVNHAQNQS NIVVRESQSS FSSSCSSSIN DNKFSNLESH PQIIDLTPPT  120
TQAPSCKERK PSLKIDLSPV VNKIEWIEFS SSMTVKPPVH AEEEEKRRYR GVRQRPWGKY  180
AAEIRDPKRR GCRVWLGTFD TAIEAAKAYD RAAFRMRGSK AILNFPLLVS KYKLEQAQAH  240
AAEDGGRKRR SEETTSTAVV KKEKSEERPL TPSSWNTISD WDQSVNGMFN LPPLSPLSPH  300
PALGYPQLAV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29167229163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7540220.0KU754022.1 Ipomoea batatas ERF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190695.11e-158PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A142L0490.0A0A142L049_IPOBA; ERF6
STRINGSolyc08g078190.1.11e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-49ethylene responsive element binding factor 5