PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc005193.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 343aa MW: 39590.6 Da PI: 9.0872

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc005193.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.4e-14	11	90	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek 72 +fY++YA +vGF++r s+ ks ++g i ++ Cs+eg+++ + ++ +++++r+r+++r+gCka+++ k + Itr_sc005193.1_g00001.1 11 SFYKSYAAKVGFDIRSSYVMKS-KDGVILSKYILCSREGYKNVTGSStlnvdeassSSTTKRRRVSNRIGCKARIVFKFIE 90 5*****************99.8899***********999999**99899999***********998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-11	11	89	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-30	109	200	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MTFSTLDAVV SFYKSYAAKV GFDIRSSYVM KSKDGVILSK YILCSREGYK NVTGSSTLNV 60 DEASSSSTTK RRRVSNRIGC KARIVFKFIE SLGYGRSNFK KEFWLFWDVV SFDATYQTNR 120 YDIVFTSFTG IDNHKKSITF AVGLLTKEDI ASYVWLFEHF KKAMGEEPKV IVTDQDPAMR 180 QAIPAVFNEA RHRFCMWHIM CKVGEKVGSV LSKNEIFRKK LNSIVWSSYL EPLEFENEWR 240 SIMEEFDLVN NNWFEQMFEL RRFWILAYFR DVPMASLLRT TSRSKGMDER KVLLAQLWGD 300 MQCCIGLAKE AKMDKLVEFA QVVVVELMAD HHGQAQVQNG GTA

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MTFSTLDAVV SFYKSYAAKV GFDIRSSYVM KSKDGVILSK YILCSREGYK NVTGSSTLNV  60
DEASSSSTTK RRRVSNRIGC KARIVFKFIE SLGYGRSNFK KEFWLFWDVV SFDATYQTNR  120
YDIVFTSFTG IDNHKKSITF AVGLLTKEDI ASYVWLFEHF KKAMGEEPKV IVTDQDPAMR  180
QAIPAVFNEA RHRFCMWHIM CKVGEKVGSV LSKNEIFRKK LNSIVWSSYL EPLEFENEWR  240
SIMEEFDLVN NNWFEQMFEL RRFWILAYFR DVPMASLLRT TSRSKGMDER KVLLAQLWGD  300
MQCCIGLAKE AKMDKLVEFA QVVVVELMAD HHGQAQVQNG GTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	73	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178624.1	1e-109	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010667127.1	1e-63	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12684	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-36	FAR1-related sequence 5