PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005173.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 547aa    MW: 60843.5 Da    PI: 5.5822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005173.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.35.9e-1311775472374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +elL++cAeavs+ d + a+ l++ l++++s +gdpmqRl ay++e+L+ar+++s+s +yk+l+++e +   sse l+++++++++
  Itr_sc005173.1_g00002.1 177 KELLFACAEAVSDADISTAEVLMNVLEKRVSVSGDPMQRLSAYLLEGLRARILSSGSIIYKKLKCKEPT---SSELLSYMQVLYHI 259
                              589*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAe 170
                              +P++kf+++ aN  I ea+ +e+r+HiiDf++ qG QW+ L+++La+Rp+gpp slRiTgv++++s   +   l+ +gerLakfAe
  Itr_sc005173.1_g00002.1 260 CPYFKFAYMSANVVIREAMMNENRIHIIDFQVAQGSQWMFLIKSLADRPGGPPfSLRITGVDDSQSAhaRGGGLQLVGERLAKFAE 345
                              *************************************************99999*********9988889999************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gvpfef++ +  + +++ele+L ++pgEa+aVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl r
  Itr_sc005173.1_g00002.1 346 SCGVPFEFHA-AGISGSEVELENLWIQPGEAVAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVTLVEQESNTNTTPFLPR 430
                              **********.7889*********************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e+l+yy+a+f+s++a  pr++++ri+ E+++++r+ivn++acega+r+erhe ++kW++r+++aGF+p pls ++ + ++++l+
  Itr_sc005173.1_g00002.1 431 FRETLDYYTAMFESIDAARPRDDRQRISAEEHCVARDIVNIIACEGADRVERHEPFGKWSMRFTMAGFTPCPLSPSVGEAMRHMLQ 516
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ + + + e +g+l+lgWk+r+L s SaWr
  Itr_sc005173.1_g00002.1 517 EYSPN-FGIAEGHGALYLGWKNRALASSSAWR 547
                              ***55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.958150528IPR005202Transcription factor GRAS
PfamPF035142.1E-128177547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQASQGPQSS SSVQRFYHQP QQQVEQYYAT FHVLNNNASN DSGSVGEQGF FQTQNEQFFT  60
LDSAPAAIDS VYYDSPPAAS VSSNRSAFSP QCSQSYMSDM HHSSDNTTCG SPLSGCSGVV  120
DGNELRHVLR ELENKLLGPE SEIDDNYSCS FSDAVPKSSS MMKWKRMLDI APSLDTKELL  180
FACAEAVSDA DISTAEVLMN VLEKRVSVSG DPMQRLSAYL LEGLRARILS SGSIIYKKLK  240
CKEPTSSELL SYMQVLYHIC PYFKFAYMSA NVVIREAMMN ENRIHIIDFQ VAQGSQWMFL  300
IKSLADRPGG PPFSLRITGV DDSQSAHARG GGLQLVGERL AKFAESCGVP FEFHAAGISG  360
SEVELENLWI QPGEAVAVNF PYMLHHMPDE SVSTMNHRDR LLRLVKSLSP KIVTLVEQES  420
NTNTTPFLPR FRETLDYYTA MFESIDAARP RDDRQRISAE EHCVARDIVN IIACEGADRV  480
ERHEPFGKWS MRFTMAGFTP CPLSPSVGEA MRHMLQEYSP NFGIAEGHGA LYLGWKNRAL  540
ASSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-561805478375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191124.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A314KGR20.0A0A314KGR2_NICAT; Scarecrow-like protein 13
STRINGXP_009773976.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13