PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc005098.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 582aa MW: 65885.2 Da PI: 9.7659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc005098.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.2e-16	2	96	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +Y+++ GF+vr s+ k+ r+g+i +r +vCs++g + + + k+rr+r +tr++C a++ ++++k+gk++v+ +e Itr_sc005098.1_g00002.1 2 NYGRSGGFDVRHSTVKRD-RDGNISMRYLVCSRQGVKGGVGSVvplvtsdnggQAKQRRRRISTRVECVARICLRRDKTGKFVVSIFE 88 69*********99998.8899**********99988899***999***************************** PP FAR1 83 leHnHela 90 ++H+H l+ Itr_sc005098.1_g00002.1 89 EKHTHRLC 96 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-12	2	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	166	256	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.249	410	446	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-4	418	442	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MNYGRSGGFD VRHSTVKRDR DGNISMRYLV CSRQGVKGGV GSVVPLVTSD NGGQAKQRRR 60 RISTRVECVA RICLRRDKTG KFVVSIFEEK HTHRLCSESS RQFMRINRTL DSTQQAFIAS 120 CIKANIGTSQ SFRLCKELMD EENRLARLFW ADQVAHDNFL VFGDTISFEA TYGTNRYSMV 180 FVPFTGVDNH RRCITLGAGL LIRENMESYV WLLETFKTAM GRSPLCVVTD QDPAMKIAVK 240 RVFPKSWHRF CMWHIMIKVS EKAGEYKLGD DRWFSNLYAD RMFWIPAYFL DMPMSGLLRT 300 TSRSEGENSA YGMFTHAHSC LIEFYMQFEG VLEAQRHKQT KLDAECEGSL PDFKTPLALE 360 RHVAQVFTIT IFYEIQKEII AACFFCRVVT ISEGEGLMLY VIKDEHNTVY SVQYKPTDFS 420 AACSCKLFLK MGLVCRHIIL VFKDAQLQTL PPQYVVGRWC KHTNVARCSE LAAASSSIGS 480 RINLLWGEIN TDMVKGNTAA IATLCGVSPP QTISIKPPAQ AKNKGSGKHI KSMRELAIEA 540 RARGERKCAA CGLYGRHDSR NCVIVPRVRT GKKAASKRRS KQ

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MNYGRSGGFD VRHSTVKRDR DGNISMRYLV CSRQGVKGGV GSVVPLVTSD NGGQAKQRRR  60
RISTRVECVA RICLRRDKTG KFVVSIFEEK HTHRLCSESS RQFMRINRTL DSTQQAFIAS  120
CIKANIGTSQ SFRLCKELMD EENRLARLFW ADQVAHDNFL VFGDTISFEA TYGTNRYSMV  180
FVPFTGVDNH RRCITLGAGL LIRENMESYV WLLETFKTAM GRSPLCVVTD QDPAMKIAVK  240
RVFPKSWHRF CMWHIMIKVS EKAGEYKLGD DRWFSNLYAD RMFWIPAYFL DMPMSGLLRT  300
TSRSEGENSA YGMFTHAHSC LIEFYMQFEG VLEAQRHKQT KLDAECEGSL PDFKTPLALE  360
RHVAQVFTIT IFYEIQKEII AACFFCRVVT ISEGEGLMLY VIKDEHNTVY SVQYKPTDFS  420
AACSCKLFLK MGLVCRHIIL VFKDAQLQTL PPQYVVGRWC KHTNVARCSE LAAASSSIGS  480
RINLLWGEIN TDMVKGNTAA IATLCGVSPP QTISIKPPAQ AKNKGSGKHI KSMRELAIEA  540
RARGERKCAA CGLYGRHDSR NCVIVPRVRT GKKAASKRRS KQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170359.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-70	FAR1-related sequence 5