PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004995.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 34537.7 Da PI: 5.978 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.4e-21 | 153 | 203 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Itr_sc004995.1_g00001.1 153 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAHDKAAYKLRGE 203 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.42E-35 | 152 | 211 | No hit | No description |
SMART | SM00380 | 5.3E-37 | 153 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-23 | 153 | 211 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 153 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 153 | 210 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 154 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 154 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 176 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAAAIDVYSS SSPVFADPFS EELMLALQPF MNYSSSSSSP PSPPSSSYYS PEPNVFPGLI 60 PIPFANRTFS DGFVSVGFEQ SGPIGLNQLS QSQILEIQTQ IELQHKQQEE EALAALLSSS 120 SSSPVFTLFQ NQEKSLLGRK AVPMKQAQKP GKLYRGVRQR HWGKWVAEIR LPKNRTRLWL 180 GTFDTAEEAA MAHDKAAYKL RGENARLNFP HFRSILSHGV EGFKPLHSSV VAKLDAICRS 240 LTDNNNNNNI DNSKSNKQQR NSEEPCFAAD NVKTESSSGV GAATSPESEI TLLEWENIIL 300 DKYPSGEIDW AAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 151 | 210 | 3 | 63 | ATERF1 |
3gcc_A | 3e-21 | 151 | 210 | 3 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183706.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | B9H544 | 2e-79 | B9H544_POPTR; ERF family protein | ||||
STRING | POPTR_0005s07900.1 | 3e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-43 | ERF family protein |