PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004968.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 469aa    MW: 52302.6 Da    PI: 7.098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004968.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.42.4e-35712141128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                              lp+G++F+Ptd+el+ e+L++kv +++       +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk
  Itr_sc004968.1_g00002.1  71 LPAGVKFDPTDQELI-EHLEAKVLARDqskshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRK 151
                              799************.99****9998855554443...144334766646**********.555666799**************** PP

                      NAM  75 nratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +r+++        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Itr_sc004968.1_g00002.1 152 RRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 214
                              **73334555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3967233IPR003441NAC domain
PROSITE profilePS5100533.29871233IPR003441NAC domain
PfamPF023654.0E-1672214IPR003441NAC domain
PROSITE profilePS510057.191456469IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MRCESNFPEI ILFDEEKCAV AAAAGNRRKE AMNKSGSDLI DAKLEEHQLC GSKHCPECGH  60
KLEGKPDWVG LPAGVKFDPT DQELIEHLEA KVLARDQSKS HPLIDEFIPT IEGEDGICYT  120
HPEKLPGVTR DGLSRHFFHR PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN  180
GKQKGCKKIL VLYTNFGKNR KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN  240
WSAERSSTGA AASEPTSCSS SRRDELSAAV VGAPMSSYSA MDIQQLKAEH FGNTPSEFEG  300
VHAAGIVGGE GSRAMEGAAA AVPEQGGACE ERDISDQHQS HAYHVTHDPP QHQHQHHHHH  360
HQIAATQFHI ISPPPPLHHA SVNILDHNID PFQVPRMLLP NDNFQQAQQQ QQQEEHHKLG  420
GGRSTSGLEE LIMGCTSSDM KEGVNQPRLP IADRLKPKGL RFKPTTSQF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-50HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755173e-50HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175744.10.0PREDICTED: uncharacterized protein LOC109171067 isoform X3
TrEMBLA0A2G9HLT50.0A0A2G9HLT5_9LAMI; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-120NAC domain containing protein 99