PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004877.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 278aa    MW: 31699.7 Da    PI: 4.3019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004877.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.81.8e-1841322128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......t 78 
                              p G+rF+P d +++ ++L   v+g++   +e+ i+e di+ + ePw+L     +++k  yf ++ +kk +   r +r+        
  Itr_sc004877.1_g00002.1   4 PLGLRFKPFDYDVL-RFLFDFVTGRSSVDDEAlIHEEDIFgEKEPWELI---PSGKKMAYFLTRLKKKGS---RVQRTvgkkmkgK 82 
                              89**********99.999999999995554555*****98356*****4...456677888888887765...4444323344447 PP

                      NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ksg+W+ + + k+v ++ ++ ++g k+++v+ ++++p+ ++ +W+m+e+ l
  Itr_sc004877.1_g00002.1  83 KSGTWHGQDTGKAVADQdGKFVMGYKRSFVYKNESEPE-QNGQWLMKEFYL 132
                              7**************99455569********9888888.8********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-182161IPR003441NAC domain
PROSITE profilePS5100522.9633161IPR003441NAC domain
PfamPF023652.5E-104131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEIPLGLRFK PFDYDVLRFL FDFVTGRSSV DDEALIHEED IFGEKEPWEL IPSGKKMAYF  60
LTRLKKKGSR VQRTVGKKMK GKKSGTWHGQ DTGKAVADQD GKFVMGYKRS FVYKNESEPE  120
QNGQWLMKEF YLPETIMRRA RAQFRIVKER EDFVLCRIHP KKYDDDDDEE EEEDDENTLE  180
EGGTNSNDSE AVAVETTTLQ RNDDPINSYL VGVPMETAIP VETLLDNMNS YIVGAPVETL  240
LAAPAVDGVP VETLPGMDSF MDLLLNMEDV TTLIDFDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152455.14e-98PREDICTED: NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-11NAC domain containing protein 47