PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004865.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 291aa MW: 32446.3 Da PI: 4.3228 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 59.1 | 8.4e-19 | 103 | 153 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++++e+ s+yF+lp ++AA eL+v+ v K++CR+ GI+ WP+Rk+ sl Itr_sc004865.1_g00001.1 103 TTTLTFEKFSEYFYLPSEQAAEELQVGREVFKKKCREVGISYWPYRKLVSL 153 5789*******************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.903 | 86 | 174 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.0E-16 | 105 | 153 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MADTTYPSSS DNSSFWDDII ISPLRDSAQS IDLTTVENFE NAPPESNEII TPLGATGTDV 60 VAVDQGTAVV AEEDNTTAVL DVAAMNASVF RGRKRARRTF CDTTTLTFEK FSEYFYLPSE 120 QAAEELQVGR EVFKKKCREV GISYWPYRKL VSLDRLLAKV QEFGEIKDQA ELQRTIKGLE 180 DERDTILQNP NLDLADATVR LRDKCDRNSS RRRRYIDPAT FSSTTPGSSS QALKFPDLPE 240 LAPEAFLSTT LGSLSQAPIF PDIPKLAPEE IQEVLAWLDE DVPPPKNISD K |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-26 | RWP-RK domain-containing protein |