PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004849.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 255aa MW: 28431.7 Da PI: 8.6187

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004849.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.3	2.4e-08	142	199	34	90
FAR1 34 vCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 vC + +++e + + ++r+r+++r+gC+a++ + ++g+++ + +e+ HnH+l+ Itr_sc004849.1_g00001.1 142 VCMDSSSAAELDGVeCSVRKRRRVSNRVGCRAHVAFRYASNGTYCTHLFEERHNHSLS 199 56555555444433256678899*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-5	141	199	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MHCGVFLNIV VCFLTLSGVF CNIEWSPKSS LPNLSSNYKY EFVDRVGVIV LVLHRHPNSS 60 LLISSANNRS EFVDRVGVPS WCLPISNSSS IAVGSYDRNG VSLTKYHVPV CEDSVKPIVG 120 KVFPDLDSAV EFYIKEGFKN VVCMDSSSAA ELDGVECSVR KRRRVSNRVG CRAHVAFRYA 180 SNGTYCTHLF EERHNHSLSS LLSRQFLKGN RKIGVGHMKF VADCVKANIE PVQSFRLFKE 240 MMGNFSNVCA TSVEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	RKRRR
2	160	164	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190767.1	3e-62	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28