PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004786.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BES1
Protein Properties Length: 310aa    MW: 35455.9 Da    PI: 9.2452
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004786.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82235.73.1e-1110381442
                   DUF822 14 nnkrRERrRRaiaakiyaGLRaqGnyklp 42
                               + RER RRa +a++  GLR++Gny+l+
  Itr_sc004786.1_g00001.1 10 EKQIRERERRAFTARMIDGLRQHGNYNLR 38
                             3467************************8 PP
2DUF822882.3e-2772163294
                   DUF822   2 gsgrkptwkErEnnk.rRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              ++ +++t++E+      RER+RRa ++++ aGLR++Gny+lp+ a +n+Vl A   eAG++v+++Gttyr    p+++  aa s +
  Itr_sc004786.1_g00001.1  72 SGNKSRTEREKQMEHmIRERKRRAFTTQMIAGLRQHGNYNLPAGASMNQVLVAVVSEAGYTVDANGTTYR--PPPPSNVVAADSLK 155
                              67899999999876526*****************************************************..22223333333334 PP

                   DUF822  87 saspessl 94 
                              + s+++s+
  Itr_sc004786.1_g00001.1 156 NWSTSASV 163
                              44444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.2E-8938IPR008540BES1/BZR1 plant transcription factor, N-terminal
PfamPF056873.7E-2573175IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.27E-43174307IPR017853Glycoside hydrolase superfamily
PfamPF013733.5E-24175304IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.805.5E-50175308IPR013781Glycoside hydrolase, catalytic domain
PRINTSPR007503.3E-7185199IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-7206224IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSPNPQPKRE KQIRERERRA FTARMIDGLR QHGNYNLRSL PNSKPSNDHE RNSNPNPQPA  60
RTRMGDNAAS TSGNKSRTER EKQMEHMIRE RKRRAFTTQM IAGLRQHGNY NLPAGASMNQ  120
VLVAVVSEAG YTVDANGTTY RPPPPSNVVA ADSLKNWSTS ASVLRIDESL SPASSDSLVL  180
LKSLNIDGVV VNCWWGIVER LKNQKYEWSG YRELFDIIRD MELKLQVVMA FNAYTGNDFN  240
VDIPLPEWVL KIGKDSPEIF FTDRVGRWNI DCLSWGIDKE PILEHRTGQE VYYEFMRSFR  300
AEFNDLFTAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1fa2_A1e-3117631038173BETA-AMYLASE
5wqu_A1e-3117631038173Beta-amylase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411PQPKREKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173590.11e-100PREDICTED: beta-amylase 8-like
STRINGXP_004164169.17e-64(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62042130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.22e-60beta-amylase 2