PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004669.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 653aa    MW: 73167.3 Da    PI: 6.6771
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004669.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-22135235198
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+kvlt sd++++g +++ +k+a+e+      + +++ s++l+  d++  +W++k+i+r++++r++lt+GW++Fv++++L +gD++
  Itr_sc004669.1_g00001.1 135 FCKVLTASDTSTHGGFSVLRKHATEClppldlN-QQTPSQDLVALDLHRIEWRFKHIFRGQPRRHLLTTGWSNFVSSKRLVAGDSF 219
                              99****************************964.3445679********************************************* PP

                              EEEE-SSSEE..EEEEE- CS
                       B3  81 vFkldgrsefelvvkvfr 98 
                              +F   + +++el+v+++ 
  Itr_sc004669.1_g00001.1 220 LFL--RGESGELRVGIRH 235
                              ***..449999****986 PP
2Auxin_resp98.59.6e-33261340183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++tk+ F v Y+Pr+  s+F+v ++k+e+a+++ + vGmRfkm+fe eds+err++Gt+vgv+d+++ +W++S WrsLk
  Itr_sc004669.1_g00001.1 261 ASHAVTTKTLFVVNYKPRM--SQFIVGLRKYEEAVNQGFLVGMRFKMRFEVEDSPERRFMGTIVGVEDIST-QWKDSDWRSLK 340
                              789***************7..9**********************************************666.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-38124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-38127250IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-20134234No hitNo description
PROSITE profilePS5086311.279135237IPR003340B3 DNA binding domain
SMARTSM010198.6E-22135237IPR003340B3 DNA binding domain
PfamPF023621.2E-20135235IPR003340B3 DNA binding domain
PfamPF065072.0E-30261340IPR010525Auxin response factor
PfamPF023097.2E-8523577IPR033389AUX/IAA domain
SuperFamilySSF542775.98E-12531617No hitNo description
PROSITE profilePS5174524.237541622IPR000270PB1 domain
PfamPF023094.0E-5587624IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MATRGSLSSQ QQQSYISAPG QDDLLYEELW KLCAGPLVDV PRTHDRVYYF PQGHMEQLEA  60
STNEELDQKT SMFSLSPKIL CQVVNIKLQV EPETDEVYAQ ITLLPEDEME HTNLDSYSHE  120
TSSSHEPSRP KVYSFCKVLT ASDTSTHGGF SVLRKHATEC LPPLDLNQQT PSQDLVALDL  180
HRIEWRFKHI FRGQPRRHLL TTGWSNFVSS KRLVAGDSFL FLRGESGELR VGIRHHAQKQ  240
NSIPSSVISS RNMHLGVLAT ASHAVTTKTL FVVNYKPRMS QFIVGLRKYE EAVNQGFLVG  300
MRFKMRFEVE DSPERRFMGT IVGVEDISTQ WKDSDWRSLK VHWDEPVPIT RPDRVSPWDI  360
EPFVPSIPSS LALPVAPKNK RPRQVIETTV LEPTLSTAST VWNPSVDSLQ ANSSPQGQRV  420
VECAWPSHVK PNASTWSVAS NHVPAHTVEQ KDNLTTCPGD KRKSDTVPPC RLFGIDLNST  480
SAGSTIEISK ASVEGCFSKT PSFGDSEQKS DLSIDTKGLK QEQSQVTQPK EGQTNQNSSI  540
RSRTKVQMQG VAVGRAVDLT AIKGYDELIS ELEDMFEIHG ELRPRKKWEI VFTDDEGDTM  600
LMGDHPWLEF CSVVRRILIC SNTEVKKTSA GNTPPSSNGK GLSTXXXXXM ERV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1572336317355Auxin response factor 1
4ldw_A1e-1572336317355Auxin response factor 1
4ldw_B1e-1572336317355Auxin response factor 1
4ldx_A1e-1572336317355Auxin response factor 1
4ldx_B1e-1572336317355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151610.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2R6PHR50.0A0A2R6PHR5_ACTCH; Auxin response factor
STRINGXP_009764747.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9