PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004615.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BES1
Protein Properties Length: 350aa    MW: 39495.2 Da    PI: 6.7354
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004615.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82283.36.7e-261176671
                   DUF822  6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrk 71
                             +++  ErE+   RER RRa ++++ aGLR++Gny+lp+ a + +Vl A   eAG++v+++Gttyr 
  Itr_sc004615.1_g00001.1 11 NKSRTEREKHMFRERERRAFTTQMIAGLRQHGNYNLPAGASMKQVLVAVVSEAGYTVDPNGTTYRP 76
                             4556799999*******************************************************2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.3E-241299IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.84E-67111348IPR017853Glycoside hydrolase superfamily
PfamPF013734.9E-35113312IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.808.6E-74113348IPR013781Glycoside hydrolase, catalytic domain
PRINTSPR007506.1E-26162181IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-26196212IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-26213224IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-26231254IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-26271293IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGDNAASTSG NKSRTEREKH MFRERERRAF TTQMIAGLRQ HGNYNLPAGA SMKQVLVAVV  60
SEAGYTVDPN GTTYRPPPPS NVVANPARVV GIDCQASVLR IDESLSPASS DSLVCYDKFL  120
LQSLKDAAKK QGQPSWGTGP DHVGCYNSRP HDTKFFRERG DYDNHYGQFF LRWYSQALID  180
HADIILSAAM EAFDETPLVV KIPGIYWWYK TSSHAAELTA GYYNTSNRDG YSPLFEVLKK  240
HNATMKFVSK ETETQISPHY LVEASADPNG LCWQVLNGAR DEGLAIAGHN APRDYDRETF  300
MRLVETSKPR NDPESYYCSF FVLERPWQRI QTPDSISELE YFVKCMHGYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-44115310208401Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156606.11e-141PREDICTED: beta-amylase 8-like
SwissprotQ9FH801e-81BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1R3JFY36e-93A0A1R3JFY3_9ROSI; Beta-amylase
TrEMBLA0A2G9HAW02e-94A0A2G9HAW0_9LAMI; Beta-amylase
TrEMBLA0A314Y3Q32e-94A0A314Y3Q3_PRUYE; Beta-amylase
TrEMBLA0A438IZA84e-93A0A438IZA8_VITVI; Beta-amylase
STRINGcassava4.1_027464m2e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62042130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.15e-84beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]