PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004457.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 194aa    MW: 21474.9 Da    PI: 8.0723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004457.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19555155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  Itr_sc004457.1_g00001.1  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMNG 55
                             59*******9.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-35565No hitNo description
Gene3DG3DSA:3.30.730.105.1E-33664IPR001471AP2/ERF domain
PROSITE profilePS5103222.102663IPR001471AP2/ERF domain
SMARTSM003808.3E-40669IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20664IPR016177DNA-binding domain
PfamPF008471.4E-12655IPR001471AP2/ERF domain
PRINTSPR003671.1E-10718IPR001471AP2/ERF domain
PRINTSPR003671.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT  60
NFPVAANKDG KEDKSSSSTA SSSSSSSSSL SAILSAKLRK CCKSLSPSLT CLRLDTENSN  120
IGVWQKRAGT SSDSNWVMTV ELGNKQQPPT KQESLSSETS EHTRDAVIVD DGNQTVNEEE  180
KIALQMIEEL LNEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17267167ATERF1
3gcc_A1e-17267167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1714191e-96GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence.
GenBankGU1715511e-96GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150136.11e-103PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI336e-79WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A314USV82e-87A0A314USV8_PRUYE; Ethylene-responsive transcription factor WIN1
STRINGXP_010250110.15e-86(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-66ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]