PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc004436.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19115.2 Da PI: 5.353 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32 | 3e-10 | 8 | 35 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 ++r++lg+f taeeAa+a+++a+ ++g Itr_sc004436.1_g00002.1 8 KRRVWLGTFETAEEAARAYDEAAILMNG 35 59*********************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.131 | 1 | 43 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-13 | 5 | 49 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-12 | 6 | 44 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-7 | 7 | 35 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 7 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.59E-20 | 8 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MHISIYRKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT NFPVAANKDG KEDKSSSSAA 60 SSSSSSSSSS LSAILSAKLR KCCKSLSPSL TCLRLDTENS NIGVWQKRAG TSSDSNWVMT 120 VELGNKQPPP PKQESLSSET SEHTRDAVIV DDGNQTVNEE EKMALQMIEE LLNEN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU171419 | 1e-100 | GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence. | |||
GenBank | GU171551 | 1e-100 | GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019150136.1 | 3e-82 | PREDICTED: ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 6e-57 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A314YPB2 | 7e-64 | A0A314YPB2_PRUYE; Ethylene-responsive transcription factor WIN1 | ||||
STRING | XP_008243869.1 | 1e-62 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G15360.1 | 5e-45 | ERF family protein |