PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004364.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 156aa MW: 17839.4 Da PI: 9.9509 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.9 | 5e-11 | 20 | 62 | 49 | 91 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++ ++ tr gC+a+ + ++++gkw+vtk ++eHnHel+p Itr_sc004364.1_g00004.1 20 ANKCYSKIDTRSGCNAMCQFDLDSSGKWVVTKHVKEHNHELCP 62 345668899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-8 | 20 | 62 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MPLRRIHLLQ ARFKAKPESA NKCYSKIDTR SGCNAMCQFD LDSSGKWVVT KHVKEHNHEL 60 CPPSASYMLR SHRNVSVDQL TYLKDMKRSG VPLSDGIRFL KHQSGGSPFV GFTARDAYNT 120 MLLDSAKHLD GTDSNTLIEI FRKRQLNESD FFLFRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166533.1 | 8e-75 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019180288.1 | 7e-75 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-18 | FAR1-related sequence 5 |