PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004349.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 814aa MW: 91407.8 Da PI: 8.2962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004349.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22	5.3e-07	688	729	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +r+r+++r+gC+ak+ +k++ dg + v ++e H+H+l+ Itr_sc004349.1_g00001.1 688 ISPKRRRVTNRVGCNAKIILKRMGDGWYFVFSIEIRHTHSLC 729 4568999**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13456	1.3E-7	594	654	No hit	No description
Pfam	PF03101	9.4E-5	686	729	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence Send to blast
MERDFGLGSR EVGSGLGVRG RVVVAAWEGF EGLDVVERLA KCGQAVWNWG KKQSSEVDRE 60 LKGCEERMRR LRGARGEVRV REFGAVQCHF FVLLKSQCSR WRQRANEMWR RNRIRGLQGS 120 VGAMVTNAAS MGKIMIDYFL DLFAAKGGNM RPVQDCVERR ISPEHNDELL CPISHDEVRK 180 AIFSMHPDKS PGLDGLSPTF FQMHWDFLGD EEREEGIHGM YVARNAPSIS HLFFADDCLF 240 FFRANNFEAG VLKEVLAEYG CASGQLVNYD KTSIVFCRNV HREDKEAVCE VLGFANSRVG 300 GKDVTLGVID SYLGLGGRSY LKRFFRGGGR KEIRWGTWGD LCKPKKYGGM GFRRVREMNR 360 AMLGKQGWKF LTKPDALVTR VFKAWYFPHC SFLEAGIGDG STVRVWGDAW LPDSDNSCIA 420 TSKPDYLGNP LVASLFHTHD REWDVELVRD VFNQRDCEQI LSVPVTTGLR GDSMFWGWEE 480 CGMYTVKSAY RLIMEVANGQ SVVCWAGVVT DRLCPLCGVE PETAIHLFAN CSFSHSCWNE 540 IDRDCGVPRS AVWSPPPAGC YKLNIDVAMD IYARQIGFGW VLRDEDGLWG CDSRVILETD 600 AQIVTRAVCG EKTNTLVRAI VDDIKKLLLD LPLVEFRLVK RSANTLAHVS AKNALCIAGG 660 SFVDYSNCFK QPAKDVCPVG EGVSESSISP KRRRVTNRVG CNAKIILKRM GDGWYFVFSI 720 EIRHTHSLCS ELAKPFMRVN RKLSVGHQSF VANCARVNIG PIKSFKLYKQ MVGDFVDVGA 780 TGVDFQNFKR DLMAYISGGD AXALTMMWMT GMRV

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence Send to blast

MERDFGLGSR EVGSGLGVRG RVVVAAWEGF EGLDVVERLA KCGQAVWNWG KKQSSEVDRE  60
LKGCEERMRR LRGARGEVRV REFGAVQCHF FVLLKSQCSR WRQRANEMWR RNRIRGLQGS  120
VGAMVTNAAS MGKIMIDYFL DLFAAKGGNM RPVQDCVERR ISPEHNDELL CPISHDEVRK  180
AIFSMHPDKS PGLDGLSPTF FQMHWDFLGD EEREEGIHGM YVARNAPSIS HLFFADDCLF  240
FFRANNFEAG VLKEVLAEYG CASGQLVNYD KTSIVFCRNV HREDKEAVCE VLGFANSRVG  300
GKDVTLGVID SYLGLGGRSY LKRFFRGGGR KEIRWGTWGD LCKPKKYGGM GFRRVREMNR  360
AMLGKQGWKF LTKPDALVTR VFKAWYFPHC SFLEAGIGDG STVRVWGDAW LPDSDNSCIA  420
TSKPDYLGNP LVASLFHTHD REWDVELVRD VFNQRDCEQI LSVPVTTGLR GDSMFWGWEE  480
CGMYTVKSAY RLIMEVANGQ SVVCWAGVVT DRLCPLCGVE PETAIHLFAN CSFSHSCWNE  540
IDRDCGVPRS AVWSPPPAGC YKLNIDVAMD IYARQIGFGW VLRDEDGLWG CDSRVILETD  600
AQIVTRAVCG EKTNTLVRAI VDDIKKLLLD LPLVEFRLVK RSANTLAHVS AKNALCIAGG  660
SFVDYSNCFK QPAKDVCPVG EGVSESSISP KRRRVTNRVG CNAKIILKRM GDGWYFVFSI  720
EIRHTHSLCS ELAKPFMRVN RKLSVGHQSF VANCARVNIG PIKSFKLYKQ MVGDFVDVGA  780
TGVDFQNFKR DLMAYISGGD AXALTMMWMT GMRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	690	694	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177735.1	1e-102	PREDICTED: uncharacterized protein LOC109172940

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3	3	8