PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004324.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 487aa    MW: 53159.1 Da    PI: 8.3248
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004324.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41172249178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +CqvegC+ dls+akeyhr+h+vCe hsk p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+++
  Itr_sc004324.1_g00002.1 172 RCQVEGCNIDLSSAKEYHRKHRVCESHSKYPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPHQ 249
                              6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.4E-35165234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.043170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-39171253IPR004333Transcription factor, SBP-box
PfamPF031103.9E-32173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEWNAKWDWE SLAMYSSKAC ESPKKLQLTD WGIVEEGELG DGSFNLSGGG GGYGSDVGQG  60
SSAKSTISAS TNSSPKDGMK ESNFTFEGGC PGDFGKKLKQ CRAEVSENSP PQDTSAGSVE  120
AWIGLKLGKR TYFENNCAGN GAKDSSISTA PMPSGPTAKT RKPSSQSATI PRCQVEGCNI  180
DLSSAKEYHR KHRVCESHSK YPKVIVGGLE RRFCQQCSRF HSLSEFDEKK RSCRRRLSDH  240
NARRRKPHQD TFQFNSARLS SSFYDGGRQQ INFVLNNAPL FHPKTAAWDN TYPSKFTITR  300
GFSSEPEKTG SPNKQPYMSG IQQPSAISKH GNAPNTFLAS KGTTPEGFTQ GMLCCLAPFL  360
NNLLSCDPIA GKGLQGSVKE SVFPSNTSTT QEFPRALSLL STSSWGSCEH NSTSLDHPPH  420
ANQNSLPEPV MHTLPLGLPL PPSEYLQAEQ HPANFRGHFL TSNTNSGSHF LDVPLLKDSD  480
FYLNAFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29164246284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228245KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199818.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_019199819.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_019199820.10.0PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLM1D7X71e-162M1D7X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000847341e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-60squamosa promoter binding protein-like 2