PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004242.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 190aa    MW: 21619.4 Da    PI: 10.4936
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004242.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1819117190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              +fY +YA ++GF+vr+++++k  r g++ ++ +vCs++g++++ k+           + +++ + + +r++C+ak+ +k++ dg +
  Itr_sc004242.1_g00006.1  19 DFYVRYACTIGFDVRRRTESKD-RWGKVLRKYLVCSRQGFKQPAKEVcpvgegvghtSISSKIRWVMNRVSCNAKIILKLMGDGGY 103
                              6*****************9998.7777****************9999*******9876677778899******************* PP

                     FAR1  77 evtkleleHnHela 90 
                               v +le  H+H l+
  Itr_sc004242.1_g00006.1 104 SVFSLEVRHTHCLC 117
                              ***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1519117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MMKVCQVGLR FSKLDDGVDF YVRYACTIGF DVRRRTESKD RWGKVLRKYL VCSRQGFKQP  60
AKEVCPVGEG VGHTSISSKI RWVMNRVSCN AKIILKLMGD GGYSVFSLEV RHTHCLCSEV  120
SKPFMRVHRK LTFGHQSFVA NCARANIGPI KSFKLYKQMV GKYVDVGATG VDFKNFKRDL  180
MAYISRGMHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172923.11e-85PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019178867.11e-83PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5