PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004231.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 224aa MW: 26041.4 Da PI: 10.2555 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 57.1 | 3.6e-18 | 60 | 108 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +is +ls yF++pi +AAkeL v +LK +C ++GI RWPhR++ sl Itr_sc004231.1_g00004.1 60 TISKAMLSTYFHMPIYKAAKELRVEYRILKTRCEELGIFRWPHRQLVSL 108 79999****************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.118 | 41 | 130 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-15 | 60 | 108 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDGVLLPSAS VIPIEWDITP TSNAVAVKQD TTTGTKESMI EKIVRRQSKR TKITFRDPST 60 ISKAMLSTYF HMPIYKAAKE LRVEYRILKT RCEELGIFRW PHRQLVSLQK LFENVKELGS 120 IEDDPELREV LKEIKDRREM MLRNPHLKLH PAEIKLRDAC TRKKSCVERK LQLHGTEAIH 180 PFNTTAYSLG HILLIAPRQM EVFRNHFKIP KSFGWSGIIP YNYG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-24 | RWP-RK domain-containing protein |