PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004198.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 156aa MW: 17547.4 Da PI: 7.6518

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004198.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.5e-20	13	64	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f+taeeAa+a+++a+ +++g+ Itr_sc004198.1_g00001.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFDTAEEAARAYDRAAYAFRGH 64 8******.******96665..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-34	13	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.238	13	71	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-32	13	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.23E-24	13	72	IPR016177	DNA-binding domain
Pfam	PF00847	2.9E-14	13	64	IPR001471	AP2/ERF domain
CDD	cd00018	1.23E-18	13	73	No hit	No description
PRINTS	PR00367	1.1E-11	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-11	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MENEERVIRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFDTAEEA ARAYDRAAYA 60 FRGHQAILNF PNDGHYAGGN VVAAAAAPGP SSSTPPPPPP PSTSSVYVPS FSVSREDYYE 120 RVGDTSEDKI IEFEYLDNNL LEDLLGSQVN KRSKLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-29	12	73	13	74	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610278.1	2e-56	PREDICTED: ethylene-responsive transcription factor ERF098-like
Refseq	XP_016485379.1	2e-56	PREDICTED: ethylene-responsive transcription factor ERF098-like
Refseq	XP_016567929.1	2e-56	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	5e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2G2X630	4e-56	A0A2G2X630_CAPBA; Ethylene-responsive transcription factor
STRING	XP_009610278.1	9e-56	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-23	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]