PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004042.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 224aa MW: 26051.5 Da PI: 9.1236 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.3 | 1.6e-10 | 34 | 76 | 49 | 91 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +++ + tr +C+a+ + +++++gkw+vtk ++eHnHel+p Itr_sc004042.1_g00002.1 34 VNKCYAKIDTRSECNAMCQFNLDSSGKWVVTKHVKEHNHELCP 76 356678899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.4E-8 | 35 | 76 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.5E-21 | 110 | 183 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVVILLLEVV VLLQMPMRRI HLFQAGFKAK PESVNKCYAK IDTRSECNAM CQFNLDSSGK 60 WVVTKHVKEH NHELCPPSAS YMLRSHRNVS VAQLTYLKDM KRSGVPLSDG MNHHCMNVMF 120 GCGFLLNERT ESFVWLFKTF LQSMDGRQPQ TIMTYQCSVM AVAIMQVFPN SRHRLCIWHI 180 GENSKKHIIK GLRIQKGFIE LFNFLLKSSD TEAEFEFYWN SMQF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157252.1 | 2e-66 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019165721.1 | 3e-66 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
TrEMBL | A0A484MES8 | 8e-41 | A0A484MES8_9ASTE; Uncharacterized protein | ||||
STRING | XP_010669163.1 | 9e-42 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 6e-22 | FAR1 family protein |