PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004039.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 331aa MW: 37346.4 Da PI: 4.7728 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 60.9 | 2.2e-19 | 189 | 231 | 5 | 47 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 + +e++skyF++pi AAkeL v+ T+LK +CR++GI WP+R Itr_sc004039.1_g00002.1 189 VVVEMISKYFHMPIYRAAKELRVGYTILKERCRELGIFKWPYR 231 56799************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.879 | 168 | 256 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-16 | 191 | 231 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MANQAYFPDQ FSYTTYDIAK YSLWDETSYP VSSSSFPNKI VDPSSDITEY SFFDELVDPT 60 PSSSLPNHIS YPISDVIGYP LLIDVADAAP ASFFPSQISY TSSDISKYPL WDQQHGISTF 120 GNGSLPNIPF DPFLGIEHNM GGLLEATAMN YLSTKENHMA STSGILVQEN TFPVASNASV 180 GGNMTTDYVV VEMISKYFHM PIYRAAKELR VGYTILKERC RELGIFKWPY RHNIENDPDI 240 KEAMKELKSR REMLLRDPNL KLNPAEIRLR DSCTRKIKYR EMMSLLHSPT LPIHPLHIPP 300 LIVDPALPLT VDPPSLATEE DESFKLLVDG F |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 7e-17 | RWP-RK domain-containing protein |