PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc003979.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39247.7 Da PI: 6.5045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W++ ++ g++R++k+c++rw +yl Itr_sc003979.1_g00001.1 14 KGPWTPEEDKKLSDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 140 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ tW+tIa +++ gRt++++k++w+++l Itr_sc003979.1_g00001.1 67 RGKFSQEEEQTILHLHSILGNNyvelidtaivlkgncscveqmsfhpsgTWSTIATHLP-GRTDNEIKNFWNTHL 140 89*********************************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.098 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.13E-24 | 15 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.69E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 65 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 66 | 142 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.271 | 66 | 144 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.4E-13 | 67 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-7 | 69 | 140 | No hit | No description |
SuperFamily | SSF46689 | 4.67E-9 | 106 | 148 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MGKAPCCDEN GLKKGPWTPE EDKKLSDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNNYV ELIDTAIVLK GNCSCVEQMS FHPSGTWSTI 120 ATHLPGRTDN EIKNFWNTHL KKKLIQMGYD PMTHRPRTDL FSSLPNLLAL ATLLQSHPLE 180 EHAAAAARLQ AQAAAQNMAA KIQYLQMLFQ SSSSSSMATT SSSSYENNGD FWDFNLPNLS 240 NKETDNNPLL SSLSQMENQT LFSIENSGAS QLLHNQVPFN FQTHLNNDNN NKSLNSDSIL 300 PPLTDCFLNN NNHKGDSSST SSNGDYQGTS SPSSYNWPEL LLEEAFMHDI S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 144 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU914755 | 3e-43 | CU914755.2 S.lycopersicum DNA sequence from clone LE_HBa-178P3 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 3e-43 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 3e-43 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190382.1 | 1e-178 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 4e-97 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1U7XLA5 | 1e-143 | A0A1U7XLA5_NICSY; myb-related protein 315-like | ||||
STRING | XP_009790391.1 | 1e-143 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-82 | myb domain protein 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|