PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003979.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 351aa    MW: 39247.7 Da    PI: 6.5045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003979.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Itr_sc003979.1_g00001.1 14 KGPWTPEEDKKLSDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                             79********************************************97 PP

2Myb_DNA-binding51.62.2e-1667140148
                              TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE++ +++++  lG++                           tW+tIa +++ gRt++++k++w+++l
  Itr_sc003979.1_g00001.1  67 RGKFSQEEEQTILHLHSILGNNyvelidtaivlkgncscveqmsfhpsgTWSTIATHLP-GRTDNEIKNFWNTHL 140
                              89*********************************************************.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.098965IPR017930Myb domain
SMARTSM007173.1E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-241590IPR009057Homeodomain-like
CDDcd001677.69E-121661No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2465145IPR009057Homeodomain-like
SMARTSM007171.2E-1166142IPR001005SANT/Myb domain
PROSITE profilePS5129411.27166144IPR017930Myb domain
PfamPF002497.4E-1367140IPR001005SANT/Myb domain
CDDcd001671.21E-769140No hitNo description
SuperFamilySSF466894.67E-9106148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGKAPCCDEN GLKKGPWTPE EDKKLSDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNNYV ELIDTAIVLK GNCSCVEQMS FHPSGTWSTI  120
ATHLPGRTDN EIKNFWNTHL KKKLIQMGYD PMTHRPRTDL FSSLPNLLAL ATLLQSHPLE  180
EHAAAAARLQ AQAAAQNMAA KIQYLQMLFQ SSSSSSMATT SSSSYENNGD FWDFNLPNLS  240
NKETDNNPLL SSLSQMENQT LFSIENSGAS QLLHNQVPFN FQTHLNNDNN NKSLNSDSIL  300
PPLTDCFLNN NNHKGDSSST SSNGDYQGTS SPSSYNWPEL LLEEAFMHDI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121445108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9147553e-43CU914755.2 S.lycopersicum DNA sequence from clone LE_HBa-178P3 on chromosome 4, complete sequence.
GenBankHG9754433e-43HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-43HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190382.11e-178PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z24e-97MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1U7XLA51e-143A0A1U7XLA5_NICSY; myb-related protein 315-like
STRINGXP_009790391.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-82myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]