PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003973.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26797.8 Da PI: 4.4162 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00015 | 32 | 77 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erEr R+++N+ f L l + + + Ka+iL ++v+ +k+L Itr_sc003973.1_g00002.1 32 KAERERLKREHLNDLFLSLANALELS----EQANGKATILNETVRSVKDL 77 579********************998....68899*********988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.137 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.89E-4 | 30 | 82 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-10 | 30 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 33 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTSPNMDSEG QATPVGKNGS TPSEMPQNGV HKAERERLKR EHLNDLFLSL ANALELSEQA 60 NGKATILNET VRSVKDLLGQ IEHLKKENAA LLSESEYMSV ETKELEDENS VLEAEISNLQ 120 SKLLSQINEI KERTSGSNLD LNLAPPECEE EALPSNVAPD YFSVPANEPA SQTAQTMMNP 180 VYIYPFRPDP RAYPAPGAPA LDSPALPVST VSKPLARYPT PTDTWSSQIL GKRPRLENET 240 QGGGSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152920.1 | 1e-144 | PREDICTED: transcription factor bHLH47-like | ||||
TrEMBL | M0ZIT3 | 3e-76 | M0ZIT3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001617 | 4e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-45 | bHLH family protein |