PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003922.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 795aa MW: 90648.9 Da PI: 8.6715

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003922.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.8e-21	49	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdg 74 +fY eYA+ vGF+vr s+ kk r+g + + +vCs+eg+++ + k + ++r+r+++r+gCka+++ kk ++g Itr_sc003922.1_g00005.1 49 EFYIEYATLVGFDVRHSTVKKD-RDGGVNLQYLVCSREGFKSVSGGKanivhgdlqdsgLVAQKRRRVSNRVGCKARVVFKKLNNG 133 6***************9998.555599999******9999999****99999999***************** PP FAR1 75 kwevtkleleHnHela 90 ++ v+++e+ HnH+l+ Itr_sc003922.1_g00005.1 134 RYWVSSFEERHNHSLC 149 ************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-18	49	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-32	270	362	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	596	632	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-4	605	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-4	607	634	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
DCGGNSDKEG EVSRIEISPG STKYWWPICD DGMKPIIGQC FETLVGGVEF YIEYATLVGF 60 DVRHSTVKKD RDGGVNLQYL VCSREGFKSV SGGKANIVHG DLQDSGLVAQ KRRRVSNRVG 120 CKARVVFKKL NNGRYWVSSF EERHNHSLCA AMFRKYMKVN RKLDFGHQAF MSNCTKANIG 180 TSQCFRLYTE FVGGTDNVGA TDVDFQNMKR DLRAYIRGCD AQLALASLVG KQDRCAAFYY 240 KHDINENDQL CRVFWADPVS RRNWTVFGDV VSFDATYSTN RYRMVFVPFT GVDNHKRCIT 300 FGAALITKED TDSYVWVLES FKDAMGTAPS CFVTDQDPAM KSALEQVYPG SRHRFCMWHI 360 MTKVSEKVGP VLSNDEVFRR KLNSIVWDEK QQPDVFESRW EALLREYGLL EQKWFAQLWE 420 AREFWIPAYF KDMPLSSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 480 XXXXXXXXXX XGQNSFFGRY LSKNASLVEF FSHFQSAMDA QRNTQSRLNA GCEGHYAPLK 540 TPLHLERHAS TVYTIKIFHE VQSEIYACCF YCSVVSIQPS GEVINYCIKD SDEQQFNVCY 600 NSIDTTATCT CLLFQRIGWL CRHIFLVFKD ARIDNIPSRY IVDRWTRRVC LRQEFELNGV 660 TVDLNATNGA TKTMENKMWS EIFACVGLAI TNPDRVEQLT RVVQQQKETF IGESKGSDGL 720 QGKNPMIQSF CGTIPSSAIL VKPPPMAKNK GSGKRIKGKR EKAIEQVKKG GRKCNGCGKR 780 EGHNSRSCLV LKGLP

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

DCGGNSDKEG EVSRIEISPG STKYWWPICD DGMKPIIGQC FETLVGGVEF YIEYATLVGF  60
DVRHSTVKKD RDGGVNLQYL VCSREGFKSV SGGKANIVHG DLQDSGLVAQ KRRRVSNRVG  120
CKARVVFKKL NNGRYWVSSF EERHNHSLCA AMFRKYMKVN RKLDFGHQAF MSNCTKANIG  180
TSQCFRLYTE FVGGTDNVGA TDVDFQNMKR DLRAYIRGCD AQLALASLVG KQDRCAAFYY  240
KHDINENDQL CRVFWADPVS RRNWTVFGDV VSFDATYSTN RYRMVFVPFT GVDNHKRCIT  300
FGAALITKED TDSYVWVLES FKDAMGTAPS CFVTDQDPAM KSALEQVYPG SRHRFCMWHI  360
MTKVSEKVGP VLSNDEVFRR KLNSIVWDEK QQPDVFESRW EALLREYGLL EQKWFAQLWE  420
AREFWIPAYF KDMPLSSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XGQNSFFGRY LSKNASLVEF FSHFQSAMDA QRNTQSRLNA GCEGHYAPLK  540
TPLHLERHAS TVYTIKIFHE VQSEIYACCF YCSVVSIQPS GEVINYCIKD SDEQQFNVCY  600
NSIDTTATCT CLLFQRIGWL CRHIFLVFKD ARIDNIPSRY IVDRWTRRVC LRQEFELNGV  660
TVDLNATNGA TKTMENKMWS EIFACVGLAI TNPDRVEQLT RVVQQQKETF IGESKGSDGL  720
QGKNPMIQSF CGTIPSSAIL VKPPPMAKNK GSGKRIKGKR EKAIEQVKKG GRKCNGCGKR  780
EGHNSRSCLV LKGLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	114	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179567.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-62	FAR1-related sequence 5