PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003902.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 1548aa    MW: 176224 Da    PI: 4.9144
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003902.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.17.1e-1913491446190
                     FAR1    1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgk 75  
                               +fY++YA +vGF++r s+  ks ++g i ++   Cs+eg+++ + ++         +++++r+r+++rtgCka+++ k   +  
  Itr_sc003902.1_g00001.1 1349 SFYKNYAAKVGFDIRSSSVMKS-KDGVILSKYILCSREGYKNVTGSStlnvdeassSSTTKRRRVSNRTGCKARIVFKFIGSLG 1431
                               5*****************9999.8899***************999999******99899999********************** PP

                     FAR1   76 wevtkleleHnHela 90  
                               ++v+k+e+ HnH ++
  Itr_sc003902.1_g00001.1 1432 YVVKKIEERHNHCMS 1446
                               ************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.830.101.3E-71103135IPR011237Peptidase M16 domain
SuperFamilySSF634114.22E-41103139IPR011249Metalloenzyme, LuxS/M16 peptidase-like
Gene3DG3DSA:3.30.830.101.3E-71200423IPR011237Peptidase M16 domain
SuperFamilySSF634114.22E-41202421IPR011249Metalloenzyme, LuxS/M16 peptidase-like
PfamPF006754.9E-20251339IPR011765Peptidase M16, N-terminal
PfamPF051932.8E-12377554IPR007863Peptidase M16, C-terminal
SuperFamilySSF634114.74E-64436670IPR011249Metalloenzyme, LuxS/M16 peptidase-like
Gene3DG3DSA:3.30.830.102.2E-68437674IPR011237Peptidase M16 domain
PfamPF161871.0E-83564846IPR032632Peptidase M16, middle/third domain
SuperFamilySSF634111.03E-36672918IPR011249Metalloenzyme, LuxS/M16 peptidase-like
Gene3DG3DSA:3.30.830.101.4E-54675868IPR011237Peptidase M16 domain
PfamPF051931.5E-78991060IPR007863Peptidase M16, C-terminal
Gene3DG3DSA:3.30.830.101.3E-629151166IPR011237Peptidase M16 domain
SuperFamilySSF634117.52E-439481164IPR011249Metalloenzyme, LuxS/M16 peptidase-like
CDDcd062222.01E-1811501247No hitNo description
SuperFamilySSF530981.67E-711661247IPR012337Ribonuclease H-like domain
PfamPF134562.2E-1511661249No hitNo description
Gene3DG3DSA:3.30.420.100.00111681255IPR012337Ribonuclease H-like domain
PfamPF031013.1E-1613491446IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1548 aa     Download sequence    Send to blast
MEFLLGVSFG STCRRTLSEP ARTKTAEDGK ISAQQKAARP KGVHYSTAPL HINIFPAAIR  60
ITRETGDLRD FEESARVNLA RALLSSPLFN LLVMAVGDVT FSSDDTVKKS PNDQRLYRYI  120
ELQNGLCALL VHDPEIYAPG PVKASGNSQG TEDDEEEEES DYEDEEEDEE GDDEGEEGDG  180
DDEDESEGEE GNEDKKDSSH KKAAAAMCVG MGSFLDPYEA QGLAHFLGIA DHFYSEVTYI  240
FMSAISLDTR KHMLFMGSTE FPDENEYDSY LSKHGGSSNA YTETEHTCYH FEVKREFLYG  300
ALKRFSQFFV SPLVKAEAME REVLAVDSEF NQVLQNDSCR LQQLQCHTSA PGHPFNRFFW  360
GNKKSLSDAT ERGVNLREQI FKLYHDNYYG KKMKLVIIGG ETLDVLESWV LELFSTVKKG  420
DMVKSSSRLE TPIWKAGKLY WLEAVKDVHI LELSWTLPSL RKDYLRKAED YLAHLLGHEG  480
RGSLLFFLKT KGWVTSISAG VGDEGMHRSS IAYIFGMSIH LTDSGLTKIF DIIGFVYQYL  540
KLLREVSPQE WIFKELQDIG LMEFRFIEEE PQDEYAAELA ENLLVYPPED VVYGDYAYEI  600
WDEQLIKYIL GFFRADNMRV DIVTKSLNNS SDVQCEPWFG SQYVEEYIPS SLLELWKDPP  660
EIDVSLHLPA KNDFIPSDFS IRADTISCDG GNAPKCILDE PLMKFWYKLD KTFKLPRANT  720
YFRVTLKGAY SNLRNALLTE LFVLLLKDEL NEIVYQASVA KLETSVSLYG DKLELKVYGF  780
NDKLPVLLSK VLAVTKSFSP KDDRFLVIKE DMERTLKNTN MKPLNHASYL RLQVLCQSFW  840
DVEEKLCLLN NLSLADLKAF LPDLLSQVGY FASKDAKGES PSMVNNLILA VNLYIEGLCH  900
GNMLEEEAVN ISSIFTSYFS VPPLPAEMRH EEYVMCLPSG ADLVRDVRVK NKLDTNSVVE  960
LYFQIEPEVG SELIKLKALV DLFDEIVEEP LFDRLRTKEQ LGYVVDCSPR VTYRILGFCF  1020
RVQSSEYDPI YLQGRIDNFI NDAKEILDNL DDDSFESFKS GLMAKLLEKD PSLSYETNRL  1080
WGQIVDKRYM FDLSEKEAEE LKSIRKSDLI EWYRTYLKQP FPKCRRLAVR VWGCNTQRKD  1140
TDAGVEPAKV IKDPTAFKKS SEFYPNAAVI EAKAIVGSMK WAWEKGIRDV EIQSDASTVI  1200
KWIQDKTTLR GPIRELIEEA NRWIDRDWRI SIKGIFREQN QVADFLATLG AQQQAEWATF  1260
TTSPPECEKV YLLDLTHATS VRRVRETTSP NGITLGTNLN TFDANSSNIE GGYSVDILPG  1320
MTKYWIHNCE DESKPKIGMT FSTFDADVSF YKNYAAKVGF DIRSSSVMKS KDGVILSKYI  1380
LCSREGYKNV TGSSTLNVDE ASSSSTTKRR RVSNRTGCKA RIVFKFIGSL GYVVKKIEER  1440
HNHCMSSILA KQFLNVNRNI DVGHQKFIAN CARANIGPTK SFNLYKEMVG DFYNVGATNV  1500
DFKNFNRDIR AYIIDEHLCK LFWADPISRK NFGCFGDVVS FDATYQTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3cww_A1e-171197116551977Insulin-degrading enzyme
3cww_B1e-171197116551977Insulin-degrading enzyme
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114071411KRRRV
Functional Description ? help Back to Top
Source Description
UniProtCleaves peptide substrates on the N-terminus of arginine residues in dibasic pairs. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1719281e-157GU171928.1 Ipomoea batatas microsatellite Stv_Ipb_1398 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159736.10.0PREDICTED: nardilysin-like isoform X1
SwissprotF4HNU60.0NRDC_ARATH; Nardilysin-like
TrEMBLA0A484LUN60.0A0A484LUN6_9ASTE; Uncharacterized protein
STRINGMigut.D00820.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5