PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003863.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 329aa    MW: 36553 Da    PI: 6.8444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003863.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19127177255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Itr_sc003863.1_g00003.1 127 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRMRG 177
                              8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-31126185IPR001471AP2/ERF domain
CDDcd000181.08E-29126185No hitNo description
PROSITE profilePS5103224.54127185IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-23127187IPR016177DNA-binding domain
PfamPF008471.7E-13127177IPR001471AP2/ERF domain
SMARTSM003802.7E-37127191IPR001471AP2/ERF domain
PRINTSPR003672.1E-10128139IPR001471AP2/ERF domain
PRINTSPR003672.1E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMYEDTEFTF DSAFLDSVQR YYFQDDFDTP AETQQVFCRR SSFPCLGENW GESTVPGDNS  60
AHVDVCNNSC GWMPAVAATA TATSVVKDEP EMGFNGIPGI WDFTVASPPE VEAAEPAAAP  120
QAVMQKHYRG VRRRPWGKFA AEIRDPAKNG ARVWLGTYET AEDAALAYDK AAYRMRGSRA  180
LLNFPLRINS GEPDPVRITA KKRLPSPENC SPSSSVTCED GCPKRRKKVS KAMEPAFSIA  240
RLSTLVQTQS SRILLAALQQ RTWCWLGTMV EPSDGDHRMS FAVLAEFKRA HTYTRECTQG  300
FSFETGCTHY MNHVHAQTIN GGTREGTTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-39126192470ATERF1
3gcc_A3e-39126192470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228PKRRKKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190826.11e-125PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A1U8MNY25e-60A0A1U8MNY2_GOSHI; ethylene-responsive transcription factor 2-like
TrEMBLA0A2J6LU742e-60A0A2J6LU74_LACSA; Uncharacterized protein
TrEMBLA0A2P5X1K45e-60A0A2P5X1K4_GOSBA; Uncharacterized protein
STRINGGorai.004G195100.12e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-38ethylene responsive element binding factor 1