PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003854.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 533aa MW: 59318.6 Da PI: 8.3163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003854.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39	2.6e-12	26	104	17	90
FAR1 17 skskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++++ r+g ++ ++ vCs+eg++++++++ ++ +r+r+++r+gCkak++ k +g ++v+ +++ H+H+++ Itr_sc003854.1_g00001.1 26 QSTTRKGRDGVVVLKQVVCSREGFKQSSSSTssttqSTVVKRRRVTNRVGCKAKVVFKVIPNGCYCVHFIKERHTHSMC 104 566677899****************99998877666667899*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-10	25	104	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.237	335	371	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	343	366	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0072	346	373	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MDSASGGCDE GYSIDIGVEG SACDMQSTTR KGRDGVVVLK QVVCSREGFK QSSSSTSSTT 60 QSTVVKRRRV TNRVGCKAKV VFKVIPNGCY CVHFIKERHT HSMCSIIAKQ FLKVNRNLDA 120 GHKLFVASCV RANIGPTRSY RLFKEIVGEY SNVGATSVDF QNFKRDLMAY ILIDDAQLFI 180 DTLFKRSELC EAFGFEYDVD EGDQLSRVFL ADVISMKNFS LFGDVVSFDA TYRTNGRKLK 240 DIVWDNSLDP NGFELRMEEY GLGDNGPRLD RSLKIVFFGS FSNGHSSLVE FLVYYDIAIS 300 AQRHAQAKLN ADVVSLTDCD GCVSYVIKDG DHRTWRVELA LNDYCSSCSC KMFERMGLLC 360 KHIFFVYKYR GLESIPSRYL VHRWTKGACL HPIFHIDGKL VDQSAKVENV RVLTNLMWSD 420 IYACVGLADS NIGRLSQLRH VINEQRQIFL QDGSENGNGV AVGSKQSVIN SFCGDVSMGS 480 TVDVHNHVQA KNKGSGKRLK TARERAASKC TVLSNQGDAT LVMNMSIIVG HAL

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MDSASGGCDE GYSIDIGVEG SACDMQSTTR KGRDGVVVLK QVVCSREGFK QSSSSTSSTT  60
QSTVVKRRRV TNRVGCKAKV VFKVIPNGCY CVHFIKERHT HSMCSIIAKQ FLKVNRNLDA  120
GHKLFVASCV RANIGPTRSY RLFKEIVGEY SNVGATSVDF QNFKRDLMAY ILIDDAQLFI  180
DTLFKRSELC EAFGFEYDVD EGDQLSRVFL ADVISMKNFS LFGDVVSFDA TYRTNGRKLK  240
DIVWDNSLDP NGFELRMEEY GLGDNGPRLD RSLKIVFFGS FSNGHSSLVE FLVYYDIAIS  300
AQRHAQAKLN ADVVSLTDCD GCVSYVIKDG DHRTWRVELA LNDYCSSCSC KMFERMGLLC  360
KHIFFVYKYR GLESIPSRYL VHRWTKGACL HPIFHIDGKL VDQSAKVENV RVLTNLMWSD  420
IYACVGLADS NIGRLSQLRH VINEQRQIFL QDGSENGNGV AVGSKQSVIN SFCGDVSMGS  480
TVDVHNHVQA KNKGSGKRLK TARERAASKC TVLSNQGDAT LVMNMSIIVG HAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	69	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179603.1	1e-170	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-17	FAR1-related sequence 5