PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003761.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 1076aa MW: 121325 Da PI: 9.7178

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003761.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2e-19	409	506	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 fY eYA+ GF+vr s++k+ r+g i++r +vCs++g r +k+ +k+rr+r+++r++C+ k+ ++k+++g+++ Itr_sc003761.1_g00002.1 409 FYMEYASAGGFDVRLSTMKRD-RDGAIIMRYLVCSRQGMRGGDKHIvnhdgeaggaINKQRRRRVSNRVECNEKICIRKDHTGEFV 493 9*************99998.8999**********998887999**9999*********************** PP FAR1 78 vtkleleHnHela 90 v+ ++ eHnH+l+ Itr_sc003761.1_g00002.1 494 VSIFVAEHNHSLC 506 *********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-17	409	506	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-31	627	719	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	908	944	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0015	919	946	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MIPVDMTHPA EVLAPSVAAP ATHGVDPPAM DAVRAQSSEP GNPVHRGDEP NHRDRSPITG 60 TDSPITGAEV QSQGRPQRLH YPTRVPRKSN FPHTESDSAQ NTKKGSRLQR SDHNTPTFHP 120 TEHKTRRHRL VLTPNGERSS AAAIRHLSPP SLCLLEAGVA ARKRVTEEPA PQEPTVAVAI 180 RSTSEVKAAT TLILPFVVGQ RRRRGVRSPH AAGEREMPPF LSVALHRRRR RVTLEATIAA 240 DSELTKRRPL ALPFDRGEEP GHRSRSSLQL RHRPTPTLPG GPSRSLPEEK ACSFAAGREE 300 RGGGEASCHA AIPCLHHGRR HLELMLILCE REGEIRNRRE GRETGDGRRI ILWLLLIRVD 360 AMGIPGVSSS QYTMSVTFRA DQSWTPTVDA KLLPEVGQHF STSAQGVTFY MEYASAGGFD 420 VRLSTMKRDR DGAIIMRYLV CSRQGMRGGD KHIVNHDGEA GGAINKQRRR RVSNRVECNE 480 KICIRKDHTG EFVVSIFVAE HNHSLCIEAL KVFMRGKRKL DAAQQSFIAN CIKSNIGMSK 540 GFRLYKEGAG AFANVGATSM EFHNFKRDLQ AYVAGGDGEM IIKKFSQRRE VCGDFVFDYH 600 LDTDNQLAPL FWADTMGRLD YSLFGDVISF DATYGTNRYR LVFVPFTGVN NHKRCVTFAA 660 GLLTKENTES YMWLLEKFKS RTGHNPRCVV TDQDPAIMIA IERVLPESRH RFCMWHIMTK 720 VSEKIGPELA RDEVFRRRLN GIVWSDRMSI DEFEVQWHVL MEEYRLTDHP WLCKLYAERS 780 FWIPAFFTDL PMSGLLRTTS RSEAQNNVFG QFTRPHSSLV EFYVQFESVL EAQRHKQSKM 840 NVECEEYLPE FKTPLSLERH VAKLFTITIF YELQHKIVAR CFYCRVVGVH EEQGVIRYDI 900 KGEDNTLFRV ERGTDGFSAM CSCQMFHQLG LVCRHMFLVF KDARLDALPT QYVVGRWCKQ 960 RNVGTGDLGT NGLWSEIKAC AVLVGNNSGR MSRMVQVLQE LRSEFSSGGT NASNGRSKAP 1020 AQAKNKGSGK RIKSKRELAI EASQLGGRKC HMCDRREGHD ARNCPFKGCL GRLNDR

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MIPVDMTHPA EVLAPSVAAP ATHGVDPPAM DAVRAQSSEP GNPVHRGDEP NHRDRSPITG  60
TDSPITGAEV QSQGRPQRLH YPTRVPRKSN FPHTESDSAQ NTKKGSRLQR SDHNTPTFHP  120
TEHKTRRHRL VLTPNGERSS AAAIRHLSPP SLCLLEAGVA ARKRVTEEPA PQEPTVAVAI  180
RSTSEVKAAT TLILPFVVGQ RRRRGVRSPH AAGEREMPPF LSVALHRRRR RVTLEATIAA  240
DSELTKRRPL ALPFDRGEEP GHRSRSSLQL RHRPTPTLPG GPSRSLPEEK ACSFAAGREE  300
RGGGEASCHA AIPCLHHGRR HLELMLILCE REGEIRNRRE GRETGDGRRI ILWLLLIRVD  360
AMGIPGVSSS QYTMSVTFRA DQSWTPTVDA KLLPEVGQHF STSAQGVTFY MEYASAGGFD  420
VRLSTMKRDR DGAIIMRYLV CSRQGMRGGD KHIVNHDGEA GGAINKQRRR RVSNRVECNE  480
KICIRKDHTG EFVVSIFVAE HNHSLCIEAL KVFMRGKRKL DAAQQSFIAN CIKSNIGMSK  540
GFRLYKEGAG AFANVGATSM EFHNFKRDLQ AYVAGGDGEM IIKKFSQRRE VCGDFVFDYH  600
LDTDNQLAPL FWADTMGRLD YSLFGDVISF DATYGTNRYR LVFVPFTGVN NHKRCVTFAA  660
GLLTKENTES YMWLLEKFKS RTGHNPRCVV TDQDPAIMIA IERVLPESRH RFCMWHIMTK  720
VSEKIGPELA RDEVFRRRLN GIVWSDRMSI DEFEVQWHVL MEEYRLTDHP WLCKLYAERS  780
FWIPAFFTDL PMSGLLRTTS RSEAQNNVFG QFTRPHSSLV EFYVQFESVL EAQRHKQSKM  840
NVECEEYLPE FKTPLSLERH VAKLFTITIF YELQHKIVAR CFYCRVVGVH EEQGVIRYDI  900
KGEDNTLFRV ERGTDGFSAM CSCQMFHQLG LVCRHMFLVF KDARLDALPT QYVVGRWCKQ  960
RNVGTGDLGT NGLWSEIKAC AVLVGNNSGR MSRMVQVLQE LRSEFSSGGT NASNGRSKAP  1020
AQAKNKGSGK RIKSKRELAI EASQLGGRKC HMCDRREGHD ARNCPFKGCL GRLNDR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU172144	6e-41	GU172144.1 Ipomoea batatas microsatellite Stv_Ipb_2587 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170359.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-83	FAR1-related sequence 5