PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003639.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 216aa MW: 24112 Da PI: 9.3041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003639.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.6	1.5e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++ Itr_sc003639.1_g00001.1 4 SCNGCRVLRKGCSDDCIIRPCLewiknPESQANATVFLAKFYGRAGLLNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelallk 98 ++++ql+q +++++l + Itr_sc003639.1_g00001.1 90 SGNWQLCQNAVQAVLKG 106 *******99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.502	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSDDCI IRPCLEWIKN PESQANATVF LAKFYGRAGL LNLINAGPQN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV QAVLKGDPVV PITSEAAAAT 120 NNEPPLKFCD IRHVNKDEMN CAASTDLHRV RTRCRFKKSG AKSRVRIGFS DEEVVCSTWV 180 EIKPSTSCLR DKVLFWVRIT LNIMFKGQSA EPPRQP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154554.1	1e-110	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	8e-81	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2J6L1N7	2e-94	A0A2J6L1N7_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400032938	6e-91	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-83	LOB domain-containing protein 41