PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003629.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 273aa MW: 28792.2 Da PI: 6.7257

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003629.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.3	1.7e-07	15	37	23	45
HHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 23 KAeELSvLCdaevaviifsstgk 45 KA+ LS+LC+a++a+i+fs+ g+ Itr_sc003629.1_g00004.1 15 KASVLSTLCGADIAIIVFSPAGN 37 9*******************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.55	1	36	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0057	7	45	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-9	8	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-7	10	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAARTSRGRQ RIEMKASVLS TLCGADIAII VFSPAGNKVF SFGHPTVEAV VERFLGEDNP 60 APVNETGDGA LATEQFIKAQ RNGRVQELNM ELTRLEAVFE FEKKRGETID GFVEANREGH 120 GWMRSYYDDL SFQQLLTLKT GMENLLKEIQ QKAHHQLMAM HGNGTPFNPY AGRVFPNGNI 180 VSGDPTFAFN FGTNGGAAGA LPFTSGVPGA HPFTSGGAAG ALPFTSGVPG AHPSTSGSSS 240 MAGGYNTVSP WVASTSAASN FAGGNLGATH AFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196307.1	6e-87	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A328DLG9	1e-34	A0A328DLG9_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-26	AGAMOUS-like 62