PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc003524.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 25293.1 Da PI: 9.991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 82 | 117 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Itr_sc003524.1_g00002.1 82 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 117 777899*****************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 4.87E-6 | 79 | 118 | No hit | No description |
Pfam | PF00249 | 1.2E-6 | 80 | 117 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-11 | 80 | 120 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.4E-10 | 80 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-6 | 82 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MDSAWVKEVG VILTKMARDP RNHKVTSLNP CTPLSLSQST MGNLDLIYFL VVLCWLGSQG 60 EWYKCMNVVV EVEIPKLVDL FFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR 120 LNSMNKDRRR SSIHDITNVN SGDVSVGQGP ITGQTNGSAA AAGGGSSGKS NKPQAVAPAP 180 AGVAMYGGAT TIGQPVGVPL VPAVGTPMNL PPQAHMAYGT PSIPGAVVPG MPHTSVHR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163229.1 | 2e-91 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019163230.1 | 2e-91 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019163231.1 | 2e-91 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019163232.1 | 2e-91 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-54 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A068VFI4 | 1e-73 | A0A068VFI4_COFCA; Uncharacterized protein | ||||
STRING | XP_009613368.1 | 2e-69 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5801 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08520.1 | 8e-50 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|