PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003521.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 471aa    MW: 53626.2 Da    PI: 5.0102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003521.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10420467246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                              ++W+  E++ l  +v+++G+g+Wk+I +      + Rt+ ++k++w++
  Itr_sc003521.1_g00005.1 420 KKWSLVEEDTLRTGVERYGKGNWKLILHAYRgifEERTEVDLKDKWRN 467
                              58********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-11413468IPR009057Homeodomain-like
PROSITE profilePS5129412.099414471IPR017930Myb domain
SMARTSM007172.2E-8418471IPR001005SANT/Myb domain
PfamPF002495.5E-9420467IPR001005SANT/Myb domain
CDDcd116608.00E-18420468No hitNo description
SuperFamilySSF466897.65E-14421468IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDIDPDISRW ILEFLLRNPL DDGTSNALIR VLPVNDNLGL KKTVLLRGME SEVSNGSVTE  60
KMLGLLEKFE ELEFQEGNQA LEELKAAYCA VAVDCTVRFL KKNGGEESSR GEYFSAVRRI  120
WRQRICRMEK ADTSGLVSEE LGNWRDAIEA AVWEDSFCDN VIKRSEEVDA VEAVQVFVKE  180
AKDRMGSSFL EYTAEMLTND NNLRELLLSE NREDKGETDG KNDNNMRELL PLENGEEQGE  240
IGGNDAALPS ASQDTAHHNN GRELRHSARK HTKAPLVGIS RGAKIADRDD LRAEAHKQYD  300
LPASPEVNKA QEALETSFME LRAVVKDPLP DALLEAASIM CQLSRRNMDD QPIQENASKR  360
SLMERNSTAH VHEWNDSFDN LPEVSGNREI RPQLPTPERR NISPLKKYEI NRLTKRRKAK  420
KWSLVEEDTL RTGVERYGKG NWKLILHAYR GIFEERTEVD LKDKWRNMSS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420LTKRRKAKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178808.10.0PREDICTED: uncharacterized protein LOC109173940
RefseqXP_019178809.10.0PREDICTED: uncharacterized protein LOC109173940
TrEMBLA0A484LJJ60.0A0A484LJJ6_9ASTE; Uncharacterized protein
STRINGXP_009587848.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-18TRF-like 5