PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003488.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 691aa MW: 78909.9 Da PI: 7.0555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003488.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.4	1.5e-10	136	185	1	51
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 +fY++YAk vGF+vr +++k+ r ge+ + +vCs+eg++ k+k++++ Itr_sc003488.1_g00005.1 136 EFYKAYAKAVGFDVRHGTMRKT-RGGEVAIKYMVCSREGFKPAAKEKNSQK 185 6***************9999.8888999********99988873333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-8	136	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-30	238	330	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	491	527	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.9E-6	498	525	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-5	502	529	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MVANSKVVVS RVVDIGLVRA VLMCSVVAAN MVCMVVVVAR CEPWWPQWSL EGLVYVYTTL 60 PSRMNVEFEQ GYSETMEANS ADMWENNSGS EENGVQETEC EMEISPNGAK QWIPTANPEE 120 TPYTGQKFKT VDEGIEFYKA YAKAVGFDVR HGTMRKTRGG EVAIKYMVCS REGFKPAAKE 180 KNSQKGADAQ MVVEDLFKMK EMNLDFYFDF DLGDGGELCR LFWVDGTSRK NFACFGDVMS 240 FDATYRTNKY RLVFVPFTGV DHHKRCITFG AGLLAKEDVE SYEWLLTSFK NAMGATPRCA 300 ITDQDAALKV AMPNIMPTTR HRFCMWHIMS KVGDKAGNKW LKLMEDYNLV EDRWFAQLYD 360 ARASWIPAYF HDIFMGGLLK TTSRSESENS YFGNFTNHHC SLVEFFMQYN SAIEQQRYKQ 420 NKLNVECEGS FPETKTPLHM EQQATTLYTI NMFYEFQTEI WEGSFTCHII HKKDSIDART 480 YTVQEKGGKA FDVIMHTNGE KIECTCKKFI RVGILCRHAL LVFNSEGVEE IPGEYIVPRW 540 TRDACVRPMH NIWWAKGVNT QADNEAQSLA NQLWNEFYNC MGLVNGWQEK MNEMLTTLQQ 600 LKKEFHKSKL QTNQSPASES TIEAIVGSRT TGEILIKPPK FAHNKGSGKR LKSNKEKAIE 660 KSKKKSRTCA TCDGKGHNSR TCIENRTDFS D

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MVANSKVVVS RVVDIGLVRA VLMCSVVAAN MVCMVVVVAR CEPWWPQWSL EGLVYVYTTL  60
PSRMNVEFEQ GYSETMEANS ADMWENNSGS EENGVQETEC EMEISPNGAK QWIPTANPEE  120
TPYTGQKFKT VDEGIEFYKA YAKAVGFDVR HGTMRKTRGG EVAIKYMVCS REGFKPAAKE  180
KNSQKGADAQ MVVEDLFKMK EMNLDFYFDF DLGDGGELCR LFWVDGTSRK NFACFGDVMS  240
FDATYRTNKY RLVFVPFTGV DHHKRCITFG AGLLAKEDVE SYEWLLTSFK NAMGATPRCA  300
ITDQDAALKV AMPNIMPTTR HRFCMWHIMS KVGDKAGNKW LKLMEDYNLV EDRWFAQLYD  360
ARASWIPAYF HDIFMGGLLK TTSRSESENS YFGNFTNHHC SLVEFFMQYN SAIEQQRYKQ  420
NKLNVECEGS FPETKTPLHM EQQATTLYTI NMFYEFQTEI WEGSFTCHII HKKDSIDART  480
YTVQEKGGKA FDVIMHTNGE KIECTCKKFI RVGILCRHAL LVFNSEGVEE IPGEYIVPRW  540
TRDACVRPMH NIWWAKGVNT QADNEAQSLA NQLWNEFYNC MGLVNGWQEK MNEMLTTLQQ  600
LKKEFHKSKL QTNQSPASES TIEAIVGSRT TGEILIKPPK FAHNKGSGKR LKSNKEKAIE  660
KSKKKSRTCA TCDGKGHNSR TCIENRTDFS D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183583.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 9-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-67	FAR1-related sequence 5