PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003467.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 352aa MW: 40345.9 Da PI: 6.3243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003467.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.1	3.9e-10	35	84	1	51
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 +fY++YAk+vGF+vr +++k+ r ge+ + +vCs+eg++ k+k++++ Itr_sc003467.1_g00001.1 35 EFYKAYAKTVGFDVRHGTMRKT-RGGEVGIKYMVCSREGFKPIVKEKNSQK 84 6***************9999.888899*********99887773322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-7	35	85	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-14	92	145	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEISPNGTKQ WIPNANPEET PYTGQKFKTV DEGIEFYKAY AKTVGFDVRH GTMRKTRGGE 60 VGIKYMVCSR EGFKPIVKEK NSQKDVCTET KGDTDSYEWL LTSFKNAMGS TPRCAITDQD 120 AALRVAVPNI MPTTRHRFCM WHIMTKVGDK AGSVLARDKE FRKALNNVVW DETLSVEEFE 180 KRWQKVMEEY DLVEDRAIEE QRYKQSKLNA ECEGSFPEIK TPLHMEQQTT TLYTINMFYE 240 FQTDIWEGSF TCHIIHQRES MDAHTYTVQE KGGKAFEVTM STNDLGPPCD SIIAHGRACV 300 RPAFILIVFN KIVLTIIAAN VIALKQIELD RFRYRDQGTI TVNRDVVSEV EA

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEISPNGTKQ WIPNANPEET PYTGQKFKTV DEGIEFYKAY AKTVGFDVRH GTMRKTRGGE  60
VGIKYMVCSR EGFKPIVKEK NSQKDVCTET KGDTDSYEWL LTSFKNAMGS TPRCAITDQD  120
AALRVAVPNI MPTTRHRFCM WHIMTKVGDK AGSVLARDKE FRKALNNVVW DETLSVEEFE  180
KRWQKVMEEY DLVEDRAIEE QRYKQSKLNA ECEGSFPEIK TPLHMEQQTT TLYTINMFYE  240
FQTDIWEGSF TCHIIHQRES MDAHTYTVQE KGGKAFEVTM STNDLGPPCD SIIAHGRACV  300
RPAFILIVFN KIVLTIIAAN VIALKQIELD RFRYRDQGTI TVNRDVVSEV EA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178259.1	3e-68	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019191182.1	2e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019194004.1	3e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-18	FAR1-related sequence 5