PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003449.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 774aa    MW: 87655.1 Da    PI: 8.3922
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003449.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.3e-2081179190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              +fY +YA+  GF+vr s+ k+  r+g i +r +vCs+eg +   ++k          ++k+rr+r ++r++C+a++ ++k+++g++
  Itr_sc003449.1_g00005.1  81 QFYMDYARASGFDVRHSTLKRG-RDGAINMRYLVCSREGVKGGGRHKanygqdgdggSTKQRRRRISNRVKCNAMICLRKDHTGEF 165
                              6****************99997.8999************99887777799*******9**************************** PP

                     FAR1  77 evtkleleHnHela 90 
                              +++ +++eH+H+l+
  Itr_sc003449.1_g00005.1 166 VISIFVEEHSHSLC 179
                              *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1781179IPR004330FAR1 DNA binding domain
PfamPF105515.6E-31300391IPR018289MULE transposase domain
PROSITE profilePS509669.075581617IPR007527Zinc finger, SWIM-type
SMARTSM005750.0028592619IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MITAMSLHPA EEICGTTTSP EGVAGGMPSS GDKGVCSSGE SLTNRTMVVT SEYVKFWIPD  60
VDDALLPTLG RRFPTLAQGI QFYMDYARAS GFDVRHSTLK RGRDGAINMR YLVCSREGVK  120
GGGRHKANYG QDGDGGSTKQ RRRRISNRVK CNAMICLRKD HTGEFVISIF VEEHSHSLCS  180
EPSRVFMRGN RKLNAAQQAF IADCIKANIG PSKGFRLYKE GAGSYANVGA TNMEFHNFKR  240
DLQQYIVGAD GEMIIEKFTQ KREVCGSFFF DYHLDEEQRL ARLFWADPTC RSNYPCYGDV  300
LSFDATYDTN RYCLVFVPFT GVDNHKRCVT FAAGLLTRED SDSYAWLLEK FKLAMGQSPR  360
CVVTDQDPAM KVAVERVFPE CRHRFCMWHI MIKVGERIGP ELAKDEVFRR RLNGIVWSDM  420
ISTAEFEMQW TTLMEEYGLT DHRWLCKLYA ERSFWIPAFF TDMPMSGLLR TTSHSEAENN  480
AFGQFTRPHS TVVEFYVQFE SVLETQRHKQ AKLNAQCEGY LPEFKTPLAL ERHVAQLYTL  540
TIFYELQKEI IAGCFYCRVE GVRKEQGYTQ YDIKGEDNRV FCVSWGPEFL NAHCSCRLFH  600
KLGLVCRHMF LVFKDAQLDT IPPQYVVRRW RKQPSVEASI VGVSEGGTSN SGPNGLWIAI  660
NACAGMVGNS ESRMSRMLQV LKELRQEFLI DGTSSSHDKG HSVAIQALCG VQPPTTIRIK  720
APAKAKNKGS GKRMKSKREL AIEESRKGAR KCHLCNRYDG HDTHNCPLKD VESA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731737KRMKSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157186.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019157187.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-88FAR1-related sequence 5