PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003371.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 33936.5 Da PI: 7.9809 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 121 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Itr_sc003371.1_g00002.1 121 HYRGVRQRP-WGKFAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 170 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-32 | 120 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.00E-19 | 121 | 179 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 121 | 179 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-12 | 121 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.973 | 121 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 121 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MIEYTQELEA AGFSGVTKEE MRCSTTAELR RGRGEKRPLS SEEEDDHPTT KPLFYSSPQS 60 QHDMSAMVSA LSQVIGCCNN TTTYAPAAAS IPALHHQSPQ PNLHHQQQPP AGGGVNQRKR 120 HYRGVRQRPW GKFAAEIRDP KKAARVWLGT FETAEAAALA YDEAALRFKG NKAKLNFPER 180 VQGRTQFGYL TTRQDLPIVS SSNNHLYSSS ASNSHTTTYP NVDHYAHLLG RAHLLPNFEV 240 STTHMFQPPP ADRPAACFQQ LPNNNYLFPF NFGTTTCSSS TSAPNNNHSG KDEWDEDLDF 300 KNTSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 120 | 181 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196139.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
TrEMBL | A0A438EZ17 | 2e-55 | A0A438EZ17_VITVI; Ethylene-responsive transcription factor ERF114 | ||||
STRING | XP_008356833.1 | 2e-55 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-34 | ERF family protein |