PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003362.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 475aa    MW: 51772.8 Da    PI: 9.1444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003362.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05628123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F r  nL+ H r H
  Itr_sc003362.1_g00001.1  6 FICEICNKGFQRDQNLQLHRRGH 28
                             89*******************88 PP
2zf-C2H211.30.001183105123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H + +
  Itr_sc003362.1_g00001.1  83 WKCDKCSKKYAVQSDWKAHSKIC 105
                              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.66E-7528No hitNo description
PfamPF121715.6E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.66E-778103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNNK EVIKKKVYIC PEKSCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTTSVPNLNF RNELLSAGNP GFGSHVFRPP QNELMVGVDA  180
AGNHHHQLGL DGQKPRLPLW LDANNANEFA GGGGLAHELL QMAAPPAANM LGLSSQNHWF  240
HGSGSASSSS LPPVMKEEDE GKISSMFYEA AAAAAQPPPP AHMSATALLQ KAAQMGSSRS  300
GNNTSSPLFG TGFGLVGSTL SSLAGSFTSR NELLHHQQHH HQNLGKQQPQ PHDQTLNGLQ  360
TSNASTLTAP ANNNNNNTTQ PNDHHPSLLL GDMNSSSSLV GENSSSSLMM QNTKGKHLNH  420
TLPSGNSEVV EGSLTRDFLG VGGSEGRPFF QPHELVKFAS TSSSSLPLND YSRHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3679143367Zinc finger protein JACKDAW
5b3h_F6e-3679143367Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166576.10.0PREDICTED: protein indeterminate-domain 9-like isoform X1
TrEMBLA0A484M8F40.0A0A484M8F4_9ASTE; Uncharacterized protein
STRINGXP_009789501.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.16e-87C2H2-like zinc finger protein