PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003341.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 593aa    MW: 63176.3 Da    PI: 9.185
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003341.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.91.7e-15160199241
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEE CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqr 41 
                              Cqv+gC++dl+++k+yh+rhkvCevhsk+++v+v++  +r
  Itr_sc003341.1_g00006.1 160 CQVQGCKKDLTSCKDYHKRHKVCEVHSKTAKVIVNEAGKR 199
                              ***********************************99988 PP
2SBP44.73.6e-142672954977
                              EEETTT--SS--S-STTTT-------S-- CS
                      SBP  49 fhelsefDeekrsCrrrLakhnerrrkkq 77 
                              fh l efD++krsCr+rLa+hnerrrk++
  Itr_sc003341.1_g00006.1 267 FHLLAEFDDGKRSCRKRLAGHNERRRKPH 295
                              9**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-22153203IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.588157294IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-14158199IPR004333Transcription factor, SBP-box
PfamPF031103.1E-9160199IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.4E-22264281IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-11266298IPR004333Transcription factor, SBP-box
PfamPF031101.0E-7267293IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGSWSYLSGG GGGGGGKGLV CDESVSMSDH GVARSRNGLM GWELGGFEGI GNQGFVELGS  60
QDLVRKAAMA NNNSGGSGGG GGGGRAFAAF HNVFSREDDS SPNSRDSSLI DLKLGGFPDH  120
IKSPKPNNTS SSSSSAHSST PAKRLRGGGG GPNSQNPPYC QVQGCKKDLT SCKDYHKRHK  180
VCEVHSKTAK VIVNEAGKRL SLAPLARDSW AEAGIRLKRP TPAPNAKTGK EFKRLSPAPS  240
VLKMGGDIRK QSCPFATSYS FWHWEGFHLL AEFDDGKRSC RKRLAGHNER RRKPHTGMHS  300
ARTGRIFQSY AATRFQGNAF STSSFVCQDI LPGSLLHPQK YETNEWYRSV KVEEGTDFSP  360
QLAIPLTNGQ AHAKSVFGSY NSEKHCPPHD GGGGISELGR GRISEGSNSY LHEMAGQDFV  420
PRGAVYHSTS LGSEVLSCCA IQGLSGISSS GRALSLLSSH SQSSSTASII PGAHSLINPG  480
TNEHYDMAQV SEKFLGVSPP ASTSALSPSA MNSSEDARLQ QMMLFSNAAQ TYAINPIVQG  540
SGYMNVKNQI SGEEDGPTID LLQLSSQLQR VEHERHSVQV KQESGAFSGL RIT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199876.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-17squamosa promoter binding protein-like 14