PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003303.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14636.9 Da PI: 11.0421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.2 | 2.6e-10 | 32 | 62 | 2 | 38 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 ykG+r +k +g+WvAeI+d ++r +lg++ t Itr_sc003303.1_g00004.1 32 PYKGIRMRK-WGKWVAEIHDT-----NTRLWLGSYYT 62 59*****99.**********5.....5*******965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-8 | 32 | 68 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.787 | 32 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-5 | 32 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 33 | 44 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-5 | 33 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-13 | 33 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MAAGGGDGVG ASICSRGRGA EKKKRGPKQK NPYKGIRMRK WGKWVAEIHD TNTRLWLGSY 60 YTSGTAAVLP VPTTWPSFTC VARQPSLTSP TTWLAMATTA NSCQRRFRIE PQQLDIGLMQ 120 FRGDYIYRPL R |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 3e-13 | cooperatively regulated by ethylene and jasmonate 1 |