PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003303.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17107.5 Da PI: 10.4474 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9.4e-15 | 30 | 78 | 3 | 55 |
AP2 3 ykGV..rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+ r +k +g+WvAeIrd ++r +lg++ t+ Aa+a++ a +l+g Itr_sc003303.1_g00002.1 30 YKGIriRMRK-WGKWVAEIRDT-----NTRLWLGSYYTPVAAARAYDVALFYLRG 78 8999777777.**********5.....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-26 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-24 | 30 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-21 | 30 | 87 | No hit | No description |
Pfam | PF00847 | 1.1E-8 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-7 | 32 | 43 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-16 | 35 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.7E-7 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAAGGGDGVG ASRGGGAEKK KRGPKQKNPY KGIRIRMRKW GKWVAEIRDT NTRLWLGSYY 60 TPVAAARAYD VALFYLRGSG AKLNFPDCVV GDGHHRQLMP KEIQNRATAV GYRIDAIQRG 120 LHVSSTQMNV NVVDHRPESD VYVTPDLNKY PHLD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071928.1 | 5e-43 | ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1U8GBU2 | 7e-41 | A0A1U8GBU2_CAPAN; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2G2VBV0 | 7e-41 | A0A2G2VBV0_CAPBA; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2G2Y0I9 | 7e-41 | A0A2G2Y0I9_CAPAN; ethylene-responsive transcription factor ERF010-like | ||||
TrEMBL | A0A2G3CPX2 | 7e-41 | A0A2G3CPX2_CAPCH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A3Q7H1Z8 | 9e-41 | A0A3Q7H1Z8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g078640.1.1 | 9e-42 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 5e-32 | related to AP2 1 |