PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003213.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60766.5 Da PI: 7.0978 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.4 | 2.6e-134 | 110 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 lv+lL++c+++v++g+ e+a+ +L+++s+la++dgd+mqR+aayf eALa r+++ +++lykal++++ + + ++e ++k+f+e Itr_sc003213.1_g00002.1 110 LVHLLVTCVNHVAAGNIENANIVLEHISHLAASDGDSMQRVAAYFNEALADRILKGWPGLYKALKSTRIT--SAADENVVQKMFFE 193 68**************************************************************988887..488888999***** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 ++P+l++s++++N+aI+ea+ege+ vHiiD+++ +++QW++Llqa++ Rpegpp++RiTg+++ +ke le+++++L++ Ae+l Itr_sc003213.1_g00002.1 194 LCPFLRLSYVITNEAIMEAMEGEKVVHIIDLNAFEPAQWISLLQAMSVRPEGPPHIRITGINE----HKEVLEQMAHQLNEAAEKL 275 ***************************************************************....9****************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................ 214 ++pf+fn+ +++rle+l++e+L vk gEa+a+++vlqlh +l Itr_sc003213.1_g00002.1 276 DIPFQFNP-IVSRLESLSIESLPVKMGEAIAISSVLQLHPFLafddemlqrntppvvsrhansvhlqrilqvnprtlgdflekeva 360 ********.79*************************************************************************** PP GRAS 215 ...........desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +++++l+ + ++L+ ++slsPk++v++eqea+hn+ s+++r +eal++y+alfd+le+++pr+s er+k+E+ Itr_sc003213.1_g00002.1 361 npygaspdstsSSPLPLATapKMMSFLNSLWSLSPKIMVMTEQEANHNGFSLMDRTMEALNFYAALFDCLESTIPRASPERQKIEK 446 *******999844444443446778************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ g+ei+n+++ceg er+erhe+lekW rle +GF++v+ls+++++q ++ll+ ++ dgy++++++g+++++W+d+pL+svSaW Itr_sc003213.1_g00002.1 447 MVYGEEIKNIISCEGLERKERHEKLEKWIPRLELSGFRKVRLSYHIMMQGRRLLHSHNYDGYNLKDQDGCFLICWQDQPLFSVSAW 532 ************************************************************************************** PP GRAS 374 r 374 r Itr_sc003213.1_g00002.1 533 R 533 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.17 | 84 | 513 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-132 | 110 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MLGKVEALGK LASFLPAKPS QVVQIVILVT KRLKVRLLNE WPVGLLGLSR LQARVPKYNL 60 LMVAMVQEEG SSSIGSSPLQ YFSMMSLSPG IGSPYPWLGE MRSERRGLFL VHLLVTCVNH 120 VAAGNIENAN IVLEHISHLA ASDGDSMQRV AAYFNEALAD RILKGWPGLY KALKSTRITS 180 AADENVVQKM FFELCPFLRL SYVITNEAIM EAMEGEKVVH IIDLNAFEPA QWISLLQAMS 240 VRPEGPPHIR ITGINEHKEV LEQMAHQLNE AAEKLDIPFQ FNPIVSRLES LSIESLPVKM 300 GEAIAISSVL QLHPFLAFDD EMLQRNTPPV VSRHANSVHL QRILQVNPRT LGDFLEKEVA 360 NPYGASPDST SSSPLPLATA PKMMSFLNSL WSLSPKIMVM TEQEANHNGF SLMDRTMEAL 420 NFYAALFDCL ESTIPRASPE RQKIEKMVYG EEIKNIISCE GLERKERHEK LEKWIPRLEL 480 SGFRKVRLSY HIMMQGRRLL HSHNYDGYNL KDQDGCFLIC WQDQPLFSVS AWRFQRYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-42 | 110 | 533 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185670.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185679.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185686.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A438GU36 | 0.0 | A0A438GU36_VITVI; Scarecrow-like protein 3 | ||||
TrEMBL | F6GX84 | 0.0 | F6GX84_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g01220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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