PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003209.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18171.2 Da    PI: 8.4892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003209.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.2e-191759345
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             ie k   +vtfskRr+g++KKA+ LS+LC+++va+i+fs+ g+
  Itr_sc003209.1_g00001.1 17 IEKKNSLEVTFSKRRAGLFKKASVLSTLCGVDVAIIVFSPAGN 59
                             88899999********************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-25767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.324758IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-23879IPR002100Transcription factor, MADS-box
CDDcd002657.21E-32877No hitNo description
PRINTSPR004041.1E-13929IPR002100Transcription factor, MADS-box
PfamPF003197.3E-221664IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAARTSRGRQ RIEMVKIEKK NSLEVTFSKR RAGLFKKASV LSTLCGVDVA IIVFSPAGNK  60
VFSFGHPNLE AVMERFLGED NPAPVKFTLG VAVTPSFLLI RCKLPQRFIT DFVIDVRVEN  120
WGVTSGIDGD LLAEDFDCSF VITFTNMYPL DAFLSVSPTP LLSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169968.12e-39PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_019176892.14e-40PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5EMV09e-30A0A2P5EMV0_TREOI; MADS-box transcription factor
STRINGSolyc01g106730.1.11e-31(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31AGAMOUS-like 62