PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003180.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17463.7 Da PI: 9.1241 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Itr_sc003180.1_g00001.1 23 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPLAAARAYDTAVYYLRG 72 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 23 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.983 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-36 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 24 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-26 | 24 | 82 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-20 | 24 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEGQGGGGDD GGCCSGKRKK ERPYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPLAAA 60 RAYDTAVYYL RGPSARLNFP ELLPGDAAGL NGLNDLSADS IRKKAIEVGS SVDATQTTTL 120 RGGGGGGAVQ EQPPPPLTAC RLQAKLDLNE KPEPEDPNLD YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 24 | 81 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176428.1 | 2e-76 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Swissprot | Q9FH94 | 1e-49 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1S4CWV8 | 9e-70 | A0A1S4CWV8_TOBAC; ethylene-responsive transcription factor ERF011-like | ||||
STRING | PGSC0003DMT400010228 | 4e-68 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 7e-52 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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